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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4yvp:A (2.6) BS02 GBM 1.1.1.-
    1.1.1.112
    1.1.1.149
    1.1.1.209
    1.1.1.210
    1.1.1.357
    1.1.1.51
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0001523 ... Q04828 26362498
    2 4yvp:B (2.6) BS02 GBM 1.1.1.-
    1.1.1.112
    1.1.1.149
    1.1.1.209
    1.1.1.210
    1.1.1.357
    1.1.1.51
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0001523 ... Q04828 26362498
    3 4yvv:A (2.3) BS02 GBM 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 26362498 MOAD: ic50=3.72uM
    4 4yvv:B (2.3) BS02 GBM 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 26362498 MOAD: ic50=3.72uM
    5 5ifu:A (2.45) BS01 GBM 6.1.1.15 GO:0000166 ... Q8I5R7 27798837 MOAD: ic50=34uM
    PDBbind: -logKd/Ki=4.47, IC50=34uM
    6 5ifu:B (2.45) BS01 GBM 6.1.1.15 GO:0000166 ... Q8I5R7 27798837 MOAD: ic50=34uM
    7 5yke:B (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    8 5yke:D (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    9 5yke:F (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    10 5yke:H (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    11 5ykf:B (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    12 5ykf:D (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    13 5ykf:F (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    14 5ykf:H (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    15 5ykg:B (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    16 5ykg:D (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    17 5ykg:F (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    18 5ykg:H (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    19 5yw7:B (4.4) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    20 6baa:E (3.63) BS01 GBM ? GO:0005267 ... Q09427 29035201
    21 6baa:F (3.63) BS01 GBM ? GO:0005267 ... Q09427 29035201
    22 6baa:G (3.63) BS01 GBM ? GO:0005267 ... Q09427 29035201
    23 6baa:H (3.63) BS01 GBM ? GO:0005267 ... Q09427 29035201
    24 6pza:C (3.74) BS02 GBM ? GO:0005267 ... Q09427 31343405
    25 7mit:E (3.4) BS02 GBM ? GO:0000165 ... Q63563 34711681
    26 7mjo:E (4.0) BS02 GBM ? GO:0000165 ... Q63563 34711681
    27 7u24:E (3.58) BS02 GBM ? GO:0005267 ... Q09427 35964676
    28 8pm6:A (3.22) BS08 GBM 7.6.2.- GO:0000139 ... O95342 37949847
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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