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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c2t:A (2.1) BS02 GAR 2.1.2.2 GO:0003824 ... P08179 10606510
    2 1c2t:B (2.1) BS02 GAR 2.1.2.2 GO:0003824 ... P08179 10606510
    3 1c3e:A (2.1) BS02 GAR 2.1.2.2 GO:0003824 ... P08179 10606510
    4 1c3e:B (2.1) BS02 GAR 2.1.2.2 GO:0003824 ... P08179 10606510
    5 1cde:A (2.5) BS01 GAR 2.1.2.2 GO:0003824 ... P08179 1631098
    6 1cde:B (2.5) BS01 GAR 2.1.2.2 GO:0003824 ... P08179 1631098
    7 1cde:C (2.5) BS01 GAR 2.1.2.2 GO:0003824 ... P08179 1631098
    8 1cde:D (2.5) BS01 GAR 2.1.2.2 GO:0003824 ... P08179 1631098
    9 1ez1:A (1.75) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 10913290
    10 1ez1:B (1.75) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 10913290
    11 1kj8:A (1.6) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 11953435
    12 1kj8:B (1.6) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 11953435
    13 1men:A (2.23) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 12450384
    14 1men:B (2.23) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 12450384
    15 1men:C (2.23) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 12450384
    16 1rby:A (2.101) BS02 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 N/A
    17 1rby:B (2.101) BS02 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 N/A
    18 4zyt:A (1.702) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    19 4zyu:A (1.95) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    20 4zyv:A (2.053) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    21 4zyw:A (2.05) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    22 4zyx:A (1.65) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    23 4zyy:A (1.85) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    24 4zyz:A (1.6) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    25 4zz0:A (1.65) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27439469
    26 4zz1:A (1.351) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 26317331
    27 4zz2:A (1.451) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 26317331
    28 4zz3:A (2.504) BS02 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 26317331
    29 5j9f:A (2.1) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 27458733
    30 7jg0:A (1.984) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 N/A
    31 7jg3:A (2.091) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 N/A
    32 7jg4:A (2.455) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 N/A
    33 8fdx:A (2.07) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37200803
    34 8fdy:A (2.06) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37200803
    35 8fdz:A (2.48) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37200803
    36 8fe0:A (2.22) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37200803
    37 8fjv:A (2.69) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37582241
    38 8fjw:A (2.08) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37582241
    39 8fjx:A (2.17) BS02 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37582241
    40 8fjy:A (2.98) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 37582241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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