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BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 4frh:A (1.8) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1202 4frl:A (1.9) BS03 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1203 4frm:A (1.9) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1204 4fro:A (1.75) BS04 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1205 4frp:A (2.0) BS03 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1206 4frq:A (2.35) BS03 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1207 4ga9:A (1.88) BS02 GAL ? GO:0002317 ... P11762 N/A
    1208 4ga9:B (1.88) BS02 GAL ? GO:0002317 ... P11762 N/A
    1209 4gal:B (1.95) BS02 GAL ? GO:0005515 ... P47929 9760227
    1210 4gbp:A (2.15) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1211 4gbp:A (2.15) BS04 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1212 4h04:A (1.8) BS01 GAL 3.2.1.140 GO:0004553 ... B3TLD6 23479733
    1213 4h04:B (1.8) BS01 GAL 3.2.1.140 GO:0004553 ... B3TLD6 23479733
    1214 4hii:A (2.3) BS01 GAL N/A N/A N/A 27183571
    1215 4hoa:A (2.0) BS02 GAL 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    1216 4i4s:A (1.4) BS01 GAL ? N/A R4GRU6 23213111
    1217 4i4s:B (1.4) BS01 GAL ? N/A R4GRU6 23213111
    1218 4i4s:B (1.4) BS02 GAL ? N/A R4GRU6 23213111
    1219 4i4s:D (1.4) BS01 GAL ? N/A R4GRU6 23213111
    1220 4i4s:D (1.4) BS02 GAL ? N/A R4GRU6 23213111
    1221 4i4x:A (1.72) BS01 GAL ? N/A R4GRU9 23213111
    1222 4i4x:B (1.72) BS01 GAL ? N/A R4GRU9 23213111
    1223 4i4x:B (1.72) BS02 GAL ? N/A R4GRU9 23213111
    1224 4i4x:B (1.72) BS03 GAL ? N/A R4GRU9 23213111
    1225 4i4x:C (1.72) BS01 GAL ? N/A R4GRU9 23213111
    1226 4i4x:D (1.72) BS01 GAL ? N/A R4GRU9 23213111
    1227 4i4x:D (1.72) BS02 GAL ? N/A R4GRU9 23213111
    1228 4i4y:B (1.9) BS01 GAL ? N/A R4GRU5 23213111
    1229 4i4y:B (1.9) BS02 GAL ? N/A R4GRU5 23213111
    1230 4i4y:B (1.9) BS03 GAL ? N/A R4GRU5 23213111
    1231 4i4y:C (1.9) BS01 GAL ? N/A R4GRU5 23213111
    1232 4i4y:D (1.9) BS01 GAL ? N/A R4GRU5 23213111
    1233 4i4y:D (1.9) BS02 GAL ? N/A R4GRU5 23213111
    1234 4iug:A (2.6) BS07 GAL 3.2.1.23 GO:0004553 ... Q2UCU3 23688418
    1235 4iyb:A (1.59) BS01 GAL ? GO:0030246 ... F6KMV5 N/A
    1236 4izx:A (1.1) BS01 GAL ? GO:0030246 ... F6KMV5 N/A
    1237 4j2s:A (1.4) BS02 GAL ? GO:0030246 ... F6KMV5 N/A
    1238 4jaw:A (1.8) BS01 GAL 3.2.1.140 GO:0004553 ... B3TLD6 23479733
    1239 4jaw:B (1.8) BS01 GAL 3.2.1.140 GO:0004553 ... B3TLD6 23479733
    1240 4jc1:A (1.5) BS02 GAL ? GO:0030246 ... P17931 23864426
    1241 4jtv:C (2.997) BS01 GAL ? GO:0019031 ... C3W5S1 23514882
    1242 4ju0:C (2.908) BS01 GAL ? GO:0019031 ... C3W5S1 23514882
    1243 4ju0:E (2.908) BS01 GAL ? GO:0019031 ... C3W5S1 23514882
    1244 4ju0:I (2.908) BS01 GAL ? GO:0019031 ... C3W5S1 23514882
    1245 4k5u:A (1.698) BS01 GAL ? GO:0005615 ... K0IE77 23782692 MOAD: Ka=9600M^-1
    1246 4k5u:B (1.698) BS01 GAL ? GO:0005615 ... K0IE77 23782692 MOAD: Ka=9600M^-1
    1247 4k5u:C (1.698) BS01 GAL ? GO:0005615 ... K0IE77 23782692 MOAD: Ka=9600M^-1
    1248 4k5u:D (1.698) BS01 GAL ? GO:0005615 ... K0IE77 23782692 MOAD: Ka=9600M^-1
    1249 4k79:B (2.2) BS01 GAL ? GO:0005615 ... K0IE77 23782692
    1250 4k79:C (2.2) BS01 GAL ? GO:0005615 ... K0IE77 23782692
    1251 4k79:D (2.2) BS01 GAL ? GO:0005615 ... K0IE77 23782692
    1252 4kbb:A (2.3) BS02 GAL 3.4.24.69 GO:0005576 ... P10844 23807078
    1253 4kbb:B (2.3) BS03 GAL 3.4.24.69 GO:0005576 ... P10844 23807078
    1254 4kbb:B (2.3) BS04 GAL 3.4.24.69 GO:0005576 ... P10844 23807078
    1255 4ku1:A (1.9) BS01 GAL ? N/A P01857 24522230
    1256 4ku1:B (1.9) BS02 GAL ? N/A P01857 24522230
    1257 4kzk:A (1.5) BS01 GAL ? GO:0042882 ... Q2T607 N/A
    1258 4l6t:B (1.859) BS01 GAL ? GO:0005576 ... Q8GAV3 24095060 PDBbind: -logKd/Ki=7.49, Kd=32nM
    1259 4l6t:C (1.859) BS01 GAL ? GO:0005576 ... Q8GAV3 24095060 PDBbind: -logKd/Ki=7.49, Kd=32nM
    1260 4l6t:D (1.859) BS02 GAL ? GO:0005576 ... Q8GAV3 24095060
    1261 4l6t:E (1.859) BS01 GAL ? GO:0005576 ... Q8GAV3 24095060
    1262 4l6t:F (1.859) BS01 GAL ? GO:0005576 ... Q8GAV3 24095060
    1263 4lbj:A (1.8) BS02 GAL ? GO:0030246 ... P17931 24326249
    1264 4lbk:A (1.6) BS02 GAL ? GO:0030246 ... P17931 24326249
    1265 4lbl:A (1.58) BS02 GAL ? GO:0030246 ... P17931 24326249 PDBbind: -logKd/Ki=4.96, Kd=11uM
    1266 4lbm:A (1.55) BS02 GAL ? GO:0030246 ... P17931 24326249
    1267 4lbn:A (1.7) BS02 GAL ? GO:0030246 ... P17931 24326249
    1268 4lbo:A (1.65) BS02 GAL ? GO:0030246 ... P17931 24326249 PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    1269 4ljh:A (1.45) BS02 GAL ? GO:0005737 ... Q05097 23869965 PDBbind: -logKd/Ki=4.71, Kd=19.4uM
    1270 4ljh:B (1.45) BS02 GAL ? GO:0005737 ... Q05097 23869965
    1271 4ljh:C (1.45) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1272 4ljh:D (1.45) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1273 4lk6:A (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965 PDBbind: -logKd/Ki=5.20, Kd=6.3uM
    1274 4lk6:B (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1275 4lk6:C (2.859) BS02 GAL ? GO:0005737 ... Q05097 23869965
    1276 4lk6:D (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1277 4lk6:E (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1278 4lk6:F (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1279 4lk6:G (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1280 4lk6:H (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1281 4lk6:I (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1282 4lk6:J (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1283 4lk6:K (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1284 4lk6:L (2.859) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1285 4lk7:A (1.758) BS02 GAL ? GO:0005737 ... Q05097 23869965 PDBbind: -logKd/Ki=5.04, Kd=9.1uM
    1286 4lk7:B (1.758) BS02 GAL ? GO:0005737 ... Q05097 23869965
    1287 4lk7:C (1.758) BS03 GAL ? GO:0005737 ... Q05097 23869965
    1288 4lk7:D (1.758) BS02 GAL ? GO:0005737 ... Q05097 23869965
    1289 4lkd:A (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    1290 4lkd:B (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1291 4lkd:C (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1292 4lkd:D (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1293 4lkd:E (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1294 4lkd:F (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1295 4lkd:G (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1296 4lkd:H (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1297 4lke:A (1.653) BS01 GAL ? GO:0005737 ... Q05097 24307364 PDBbind: -logKd/Ki=5.37, Kd=4.3uM
    1298 4lke:B (1.653) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1299 4lke:C (1.653) BS01 GAL ? GO:0005737 ... Q05097 24307364
    1300 4lke:D (1.653) BS02 GAL ? GO:0005737 ... Q05097 24307364
    1301 4lkf:A (1.64) BS01 GAL ? GO:0005737 ... Q05097 24307364 PDBbind: -logKd/Ki=5.37, Kd=4.3uM
    1302 4lkf:B (1.64) BS01 GAL ? GO:0005737 ... Q05097 24307364 PDBbind: -logKd/Ki=5.37, Kd=4.3uM
    1303 4lkg:A (2.994) BS01 GAL ? GO:0005886 ... V5IRV0 24009358 PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    1304 4lkk:A (2.491) BS01 GAL ? GO:0005886 ... V5IRV5 24009358 PDBbind: -logKd/Ki=5.92, Kd=1.20uM
    1305 4lks:A (1.5) BS02 GAL ? N/A A0A0H2YST8 28158290
    1306 4lks:C (1.5) BS02 GAL ? N/A A0A0H2YST8 28158290
    1307 4lo1:A (2.254) BS01 GAL ? N/A Q45871 24130488 MOAD: Kd~1.8mM
    1308 4lo1:B (2.254) BS01 GAL ? N/A Q45871 24130488 MOAD: Kd~1.8mM
    1309 4lo2:A (2.254) BS01 GAL ? N/A Q45871 24130488
    1310 4lo2:B (2.254) BS01 GAL ? N/A Q45871 24130488
    1311 4lo3:A (2.249) BS01 GAL ? N/A Q45871 24130488
    1312 4lo3:B (2.249) BS01 GAL ? N/A Q45871 24130488
    1313 4mby:A (1.48) BS02 GAL ? GO:0005198 ... P04010 24204265
    1314 4mby:B (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    1315 4mby:C (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    1316 4mby:D (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    1317 4mby:E (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    1318 4mby:F (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    1319 4mby:I (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    1320 4mby:J (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    1321 4mbz:A (1.75) BS02 GAL ? GO:0005198 ... P04010 24204265
    1322 4mbz:B (1.75) BS01 GAL ? GO:0005198 ... P04010 24204265
    1323 4mbz:C (1.75) BS01 GAL ? GO:0005198 ... P04010 24204265
    1324 4mbz:E (1.75) BS01 GAL ? GO:0005198 ... P04010 24204265
    1325 4mbz:F (1.75) BS01 GAL ? GO:0005198 ... P04010 24204265
    1326 4mbz:I (1.75) BS01 GAL ? GO:0005198 ... P04010 24204265
    1327 4mbz:J (1.75) BS01 GAL ? GO:0005198 ... P04010 24204265
    1328 4no4:A (1.399) BS02 GAL ? GO:0002317 ... P11762 N/A
    1329 4no4:B (1.399) BS02 GAL ? GO:0002317 ... P11762 N/A
    1330 4no4:C (1.399) BS02 GAL ? GO:0002317 ... P11762 N/A
    1331 4no4:D (1.399) BS02 GAL ? GO:0002317 ... P11762 N/A
    1332 4no4:E (1.399) BS02 GAL ? GO:0002317 ... P11762 N/A
    1333 4no4:F (1.399) BS02 GAL ? GO:0002317 ... P11762 N/A
    1334 4nrk:E (2.63) BS01 GAL ? GO:0019031 ... P03460 24503069
    1335 4nrl:C (2.72) BS01 GAL ? GO:0019031 ... P03460 24503069
    1336 4oaa:A (3.5) BS02 GAL N/A GO:0005351 ... N/A 24453216
    1337 4oaa:B (3.5) BS02 GAL N/A GO:0005351 ... N/A 24453216
    1338 4ont:D (2.15) BS01 GAL ? N/A P08603 25402769
    1339 4ont:E (2.15) BS01 GAL ? N/A P08603 25402769
    1340 4ouj:A (1.46) BS01 GAL ? N/A B1INP8 24631690
    1341 4ouj:B (1.46) BS01 GAL ? N/A B1INP8 24631690
    1342 4owl:B (2.1) BS01 GAL ? N/A P19247 24862282
    1343 4owl:C (2.1) BS01 GAL ? N/A P19247 24862282
    1344 4owl:D (2.1) BS01 GAL ? N/A P19247 24862282
    1345 4owl:E (2.1) BS01 GAL ? N/A P19247 24862282
    1346 4owl:F (2.1) BS01 GAL ? N/A P19247 24862282
    1347 4owl:G (2.1) BS01 GAL ? N/A P19247 24862282
    1348 4p1v:A (1.5497) BS01 GAL ? N/A G8FL04 24648450
    1349 4p1v:B (1.5497) BS01 GAL ? N/A G8FL04 24648450
    1350 4p1v:C (1.5497) BS01 GAL ? N/A G8FL04 24648450
    1351 4p1v:D (1.5497) BS01 GAL ? N/A G8FL04 24648450
    1352 4p25:A (1.4991) BS01 GAL ? N/A G8FL04 24648450
    1353 4p25:B (1.4991) BS01 GAL ? N/A G8FL04 24648450
    1354 4p25:C (1.4991) BS01 GAL ? N/A G8FL04 24648450
    1355 4p25:D (1.4991) BS02 GAL ? N/A G8FL04 24648450
    1356 4p2n:A (1.7) BS01 GAL ? N/A G8FL04 24648450
    1357 4p2n:B (1.7) BS02 GAL ? N/A G8FL04 24648450
    1358 4p2n:C (1.7) BS01 GAL ? N/A G8FL04 24648450
    1359 4p2n:D (1.7) BS01 GAL ? N/A G8FL04 24648450
    1360 4p3i:A (1.6941) BS01 GAL ? N/A G8FL04 24648450
    1361 4p3i:B (1.6941) BS01 GAL ? N/A G8FL04 24648450
    1362 4p3i:C (1.6941) BS01 GAL ? N/A G8FL04 24648450
    1363 4p3i:D (1.6941) BS02 GAL ? N/A G8FL04 24648450
    1364 4por:B (2.09) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1365 4por:C (2.09) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1366 4por:F (2.09) BS02 GAL ? GO:0005198 ... E9NQ90 24648448
    1367 4por:H (2.09) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1368 4por:I (2.09) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1369 4por:J (2.09) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1370 4pos:A (2.0) BS02 GAL ? GO:0005198 ... E9NQ90 24648448
    1371 4pos:B (2.0) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1372 4pos:C (2.0) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1373 4pos:E (2.0) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1374 4pos:F (2.0) BS02 GAL ? GO:0005198 ... E9NQ90 24648448
    1375 4pos:G (2.0) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1376 4pos:H (2.0) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1377 4pos:I (2.0) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1378 4pos:J (2.0) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1379 4pot:A (2.1) BS02 GAL ? GO:0005198 ... E9NQ90 24648448
    1380 4pot:B (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1381 4pot:C (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1382 4pot:D (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1383 4pot:E (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1384 4pot:F (2.1) BS02 GAL ? GO:0005198 ... E9NQ90 24648448
    1385 4pot:G (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1386 4pot:H (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1387 4pot:I (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1388 4pot:J (2.1) BS01 GAL ? GO:0005198 ... E9NQ90 24648448
    1389 4q26:A (1.399) BS01 GAL ? GO:0002317 ... P09382 N/A
    1390 4q26:B (1.399) BS01 GAL ? GO:0002317 ... P09382 N/A
    1391 4q26:G (1.399) BS01 GAL ? GO:0002317 ... P09382 N/A
    1392 4q26:H (1.399) BS01 GAL ? GO:0002317 ... P09382 N/A
    1393 4q6y:B (3.0) BS02 GAL ? N/A P01857 25036289
    1394 4q6y:C (3.0) BS01 GAL ? N/A P01857 25036289
    1395 4q6y:D (3.0) BS01 GAL ? N/A P01857 25036289
    1396 4q74:A (2.19) BS01 GAL ? N/A P01857 25036289
    1397 4q74:B (2.19) BS01 GAL ? N/A P01857 25036289
    1398 4r6p:G (1.7) BS05 GAL ? GO:0005575 ... P18670 25664742
    1399 4r9a:A (1.197) BS02 GAL ? GO:0030246 ... P17931 25662390
    1400 4r9b:A (1.2) BS02 GAL ? GO:0030246 ... P17931 25662390
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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