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BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 2ox9:C (1.95) BS01 GAL ? N/A Q8K4Q8 17420244
    602 2ox9:D (1.95) BS01 GAL ? N/A Q8K4Q8 17420244
    603 2pel:A (2.25) BS02 GAL ? GO:0030246 ... P02872 8656429
    604 2pel:B (2.25) BS01 GAL ? GO:0030246 ... P02872 8656429
    605 2pel:C (2.25) BS02 GAL ? GO:0030246 ... P02872 8656429
    606 2pel:D (2.25) BS01 GAL ? GO:0030246 ... P02872 8656429
    607 2ql1:A (2.534) BS02 GAL ? N/A P01857 18078997
    608 2rgs:A (2.13) BS02 GAL ? N/A P01867 18783468
    609 2rgs:B (2.13) BS02 GAL ? N/A P01867 18783468
    610 2rjo:A (2.05) BS01 GAL ? N/A B2TEP5 N/A
    611 2sba:A (2.6) BS01 GAL ? GO:0030246 ... P05046 7711015
    612 2tep:A (2.5) BS01 GAL ? GO:0030246 ... P02872 N/A
    613 2tep:B (2.5) BS01 GAL ? GO:0030246 ... P02872 N/A
    614 2tep:C (2.5) BS01 GAL ? GO:0030246 ... P02872 N/A
    615 2tep:D (2.5) BS01 GAL ? GO:0030246 ... P02872 N/A
    616 2v72:A (2.25) BS02 GAL 3.2.1.18 N/A Q8XMY5 17850114 MOAD: Ka=1360M^-1
    617 2vng:A (1.4) BS01 GAL 3.2.1.- N/A Q8XNK4 18292090
    618 2vng:B (1.4) BS01 GAL 3.2.1.- N/A Q8XNK4 18292090
    619 2vno:A (1.45) BS01 GAL 3.2.1.- N/A Q8XNK4 18292090
    620 2vno:A (1.45) BS03 GAL 3.2.1.- N/A Q8XNK4 18292090
    621 2vno:B (1.45) BS02 GAL 3.2.1.- N/A Q8XNK4 18292090
    622 2vs3:A (2.2) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 18651752
    623 2vs3:B (2.2) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 18651752
    624 2vs4:A (1.77) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 18651752
    625 2vs4:B (1.77) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 18651752
    626 2vu9:A (1.6) BS01 GAL 3.4.24.69 GO:0005576 ... P0DPI1 18704164
    627 2vuo:A (1.95) BS01 GAL ? N/A P01870 18764781
    628 2vuo:B (1.95) BS02 GAL ? N/A P01870 18764781
    629 2vxj:A (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    630 2vxj:B (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    631 2vxj:C (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    632 2vxj:D (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    633 2vxj:E (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    634 2vxj:F (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    635 2vxj:G (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    636 2vxj:H (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    637 2vxj:I (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    638 2vxj:J (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    639 2vxj:K (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    640 2vxj:L (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    641 2vxj:M (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    642 2vxj:N (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    643 2vxj:O (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    644 2vxj:P (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    645 2vxj:Q (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    646 2vxj:R (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    647 2vxj:S (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    648 2vxj:T (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    649 2vxj:U (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    650 2vxj:V (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    651 2vxj:W (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    652 2vxj:X (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    653 2w7y:A (2.35) BS01 GAL N/A N/A N/A 19285508 PDBbind: -logKd/Ki=6.08, Kd=0.83uM
    654 2w7y:B (2.35) BS01 GAL N/A N/A N/A 19285508
    655 2wgz:B (2.12) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 19486884
    656 2wkk:A (1.5) BS02 GAL ? GO:0005576 ... Q9P4R8 20062796
    657 2wkk:B (1.5) BS02 GAL ? GO:0005576 ... Q9P4R8 20062796
    658 2wkk:C (1.5) BS02 GAL ? GO:0005576 ... Q9P4R8 20062796
    659 2wkk:D (1.5) BS02 GAL ? GO:0005576 ... Q9P4R8 20062796
    660 2wmg:A (2.3) BS01 GAL ? GO:0005975 ... A0A0H2US34 19608744
    661 2wmh:A (1.7) BS01 GAL ? GO:0005975 ... A0A0H2US34 19608744
    662 2wmi:A (1.9) BS01 GAL N/A GO:0005975 ... N/A 19608744
    663 2wmi:B (1.9) BS01 GAL N/A GO:0005975 ... N/A 19608744
    664 2wmj:A (2.0) BS01 GAL N/A GO:0005975 ... N/A 19608744
    665 2wmj:B (2.0) BS01 GAL N/A GO:0005975 ... N/A 19608744
    666 2wmk:A (1.9) BS01 GAL N/A GO:0005975 ... N/A 19608744
    667 2wmk:B (1.9) BS01 GAL N/A GO:0005975 ... N/A 19608744
    668 2wn2:A (1.82) BS01 GAL ? GO:0000281 ... P02886 20580724
    669 2wn2:B (1.82) BS01 GAL ? GO:0000281 ... P02886 20580724
    670 2wn2:C (1.82) BS01 GAL ? GO:0000281 ... P02886 20580724
    671 2wnb:A (1.55) BS01 GAL 2.4.3.2
    2.4.3.4
    GO:0006486 ... Q02745 19820709
    672 2wnf:A (1.25) BS01 GAL 2.4.3.2
    2.4.3.4
    GO:0006486 ... Q02745 19820709
    673 2wr1:C (2.1) BS01 GAL 3.1.1.53 GO:0001681 ... D0VWP8 19805083
    674 2wrg:J (3.0) BS01 GAL ? GO:0019031 ... Q9WFX3 19805083
    675 2wrg:M (3.0) BS01 GAL ? GO:0019031 ... Q9WFX3 19805083
    676 2wsv:A (2.0) BS02 GAL ? GO:0030246 ... Q83467 20686025
    677 2wsv:A (2.0) BS04 GAL ? GO:0030246 ... Q83467 20686025
    678 2wt0:A (1.91) BS01 GAL ? GO:0030246 ... Q83467 20686025
    679 2wt1:A (1.9) BS02 GAL ? GO:0030246 ... Q83467 20686025
    680 2wt1:A (1.9) BS03 GAL ? GO:0030246 ... Q83467 20686025
    681 2wt2:A (2.5) BS01 GAL ? GO:0030246 ... Q83467 20686025
    682 2wt2:A (2.5) BS02 GAL ? GO:0030246 ... Q83467 20686025
    683 2wt2:B (2.5) BS01 GAL ? GO:0030246 ... Q83467 20686025
    684 2wt2:B (2.5) BS02 GAL ? GO:0030246 ... Q83467 20686025
    685 2wt2:B (2.5) BS03 GAL ? GO:0030246 ... Q83467 20686025
    686 2x2t:A (1.97) BS01 GAL ? GO:0030246 ... A7XUK7 20566411
    687 2xfe:A (1.82) BS01 GAL ? GO:0046872 ... D7GNB4 20659893
    688 2xfe:A (1.82) BS02 GAL ? GO:0046872 ... D7GNB4 20659893
    689 2xg3:A (1.2) BS01 GAL ? GO:0030246 ... P17931 20873837 PDBbind: -logKd/Ki=4.74, Kd=18.2uM
    690 2xom:A (0.95) BS01 GAL 3.2.1.89 N/A Q9X0S8 20826814
    691 2xom:A (0.95) BS02 GAL 3.2.1.89 N/A Q9X0S8 20826814
    692 2xon:A (1.4) BS01 GAL 3.2.1.89 N/A Q9X0S8 20826814
    693 2xon:A (1.4) BS02 GAL 3.2.1.89 N/A Q9X0S8 20826814
    694 2xon:L (1.4) BS01 GAL 3.2.1.89 N/A Q9X0S8 20826814
    695 2xon:L (1.4) BS02 GAL 3.2.1.89 N/A Q9X0S8 20826814
    696 2xrq:D (2.4) BS01 GAL ? GO:0005576 ... P32890 21168418
    697 2xrq:E (2.4) BS01 GAL ? GO:0005576 ... P32890 21168418
    698 2xrq:F (2.4) BS01 GAL ? GO:0005576 ... P32890 21168418
    699 2xrq:G (2.4) BS01 GAL ? GO:0005576 ... P32890 21168418
    700 2xrq:H (2.4) BS01 GAL ? GO:0005576 ... P32890 21168418
    701 2xrs:D (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    702 2xrs:E (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    703 2xrs:F (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    704 2xrs:G (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    705 2xrs:H (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    706 2xrs:L (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    707 2xrs:M (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    708 2xrs:N (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    709 2xrs:O (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    710 2xrs:P (1.81) BS01 GAL ? GO:0005576 ... P32890 21168418
    711 2y9g:A (1.67) BS01 GAL ? N/A Q7Z8V1 21632870
    712 2y9g:A (1.67) BS02 GAL ? N/A Q7Z8V1 21632870
    713 2y9g:A (1.67) BS04 GAL ? N/A Q7Z8V1 21632870
    714 2y9g:A (1.67) BS05 GAL ? N/A Q7Z8V1 21632870
    715 2yfo:A (1.35) BS02 GAL 2.7.-.-
    3.2.1.22
    GO:0004553 ... G4T4R7 21931163
    716 2yfz:A (1.8) BS02 GAL N/A N/A N/A 21454512
    717 2ygm:A (2.35) BS01 GAL ? N/A C1CB04 21767550
    718 2ygm:B (2.35) BS01 GAL ? N/A C1CB04 21767550
    719 2ymz:B (1.75) BS02 GAL ? GO:0016936 ... E1C0Z4 23999290
    720 2ymz:D (1.75) BS02 GAL ? GO:0016936 ... E1C0Z4 23999290
    721 2yvv:A (2.6) BS01 GAL 4.2.2.1 GO:0004415 ... Q9A0M7 N/A
    722 2yxs:A (2.13) BS02 GAL ? GO:0030246 ... O00214 N/A
    723 2yy1:A (2.17) BS01 GAL ? GO:0030246 ... O00182 N/A
    724 2z4t:A (2.5) BS02 GAL ? GO:0016757 ... A8QYL1 17962295
    725 2z55:D (2.5) BS02 GAL ? GO:0005216 ... P29563 18082767
    726 2z55:E (2.5) BS01 GAL ? GO:0005216 ... P29563 18082767
    727 2z8d:A (1.85) BS01 GAL ? GO:0046872 ... A8W790 18332142
    728 2z8d:B (1.85) BS01 GAL ? GO:0046872 ... A8W790 18332142
    729 2z8e:A (1.99) BS01 GAL ? GO:0046872 ... A8W790 18332142
    730 2z8e:B (1.99) BS01 GAL ? GO:0046872 ... A8W790 18332142
    731 2z8f:A (1.65) BS02 GAL ? GO:0046872 ... A8W790 18332142
    732 2z8f:A (1.65) BS03 GAL ? GO:0046872 ... A8W790 18332142
    733 2z8f:B (1.65) BS02 GAL ? GO:0046872 ... A8W790 18332142
    734 2z8f:B (1.65) BS03 GAL ? GO:0046872 ... A8W790 18332142
    735 2z8l:A (1.65) BS01 GAL ? GO:0005515 ... Q9ZFS6 17996251
    736 2zgm:A (1.9) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 19361423
    737 2zgm:B (1.9) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 19361423
    738 2zgn:B (2.5) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 19361423
    739 2zgo:A (2.0) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 19361423
    740 2zgo:B (2.0) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 19361423
    741 2zhk:A (1.8) BS01 GAL ? GO:0030246 ... O00182 18977853
    742 2zhk:B (1.8) BS01 GAL ? GO:0030246 ... O00182 18977853
    743 2zhl:A (1.75) BS01 GAL ? GO:0030246 ... O00182 18977853
    744 2zhl:B (1.75) BS01 GAL ? GO:0030246 ... O00182 18977853
    745 2zhl:C (1.75) BS01 GAL ? GO:0030246 ... O00182 18977853
    746 2zhl:D (1.75) BS01 GAL ? GO:0030246 ... O00182 18977853
    747 2zhm:A (1.84) BS01 GAL ? GO:0030246 ... O00182 18977853
    748 2zhm:B (1.84) BS01 GAL ? GO:0030246 ... O00182 18977853
    749 2zhm:B (1.84) BS02 GAL ? GO:0030246 ... O00182 18977853
    750 2zhm:C (1.84) BS01 GAL ? GO:0030246 ... O00182 18977853
    751 2zhm:D (1.84) BS01 GAL ? GO:0030246 ... O00182 18977853
    752 2zhn:A (1.3) BS01 GAL ? GO:0030246 ... O00182 18977853
    753 2zkn:A (1.86) BS02 GAL ? GO:0002317 ... P09382 18796645
    754 2zl6:B (1.43) BS01 GAL ? N/A Q83884 18599458
    755 2zqn:A (1.9) BS01 GAL ? N/A O96048 19153466
    756 2zqn:A (1.9) BS02 GAL ? N/A O96048 19153466
    757 2zqn:B (1.9) BS01 GAL ? N/A O96048 19153466
    758 2zqn:B (1.9) BS02 GAL ? N/A O96048 19153466
    759 2zx4:A (2.7) BS01 GAL ? GO:0001674 ... P86179 19524596
    760 2zx4:A (2.7) BS03 GAL ? GO:0001674 ... P86179 19524596
    761 2zx4:B (2.7) BS02 GAL ? GO:0001674 ... P86179 19524596
    762 3a23:A (1.9) BS01 GAL 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=610M^-1
    763 3a23:B (1.9) BS01 GAL 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=610M^-1
    764 3a23:B (1.9) BS02 GAL 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=610M^-1
    765 3afk:A (1.95) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=3.60, Kd=251.89uM
    766 3afk:B (1.95) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    767 3agv:B (2.15) BS02 GAL ? N/A P01857 20675355
    768 3ah4:B (1.78) BS01 GAL ? GO:0005576 ... P0DPR0 18178224
    769 3ah4:B (1.78) BS02 GAL ? GO:0005576 ... P0DPR0 18178224
    770 3ajy:A (2.01) BS02 GAL N/A N/A N/A 21565705
    771 3ajy:C (2.01) BS02 GAL N/A N/A N/A 21565705
    772 3ajz:A (1.5) BS02 GAL N/A N/A N/A 21565705
    773 3ak0:A (1.59) BS02 GAL N/A N/A N/A 21565705
    774 3ak0:B (1.59) BS02 GAL N/A N/A N/A 21565705
    775 3ap4:A (2.33) BS02 GAL ? GO:0030246 ... O00214 21288902
    776 3ap4:B (2.33) BS02 GAL ? GO:0030246 ... O00214 21288902
    777 3ap4:C (2.33) BS02 GAL ? GO:0030246 ... O00214 21288902
    778 3ap4:D (2.33) BS02 GAL ? GO:0030246 ... O00214 21288902
    779 3ap6:A (1.58) BS02 GAL ? GO:0030246 ... O00214 21288902
    780 3ap6:B (1.58) BS02 GAL ? GO:0030246 ... O00214 21288902
    781 3ap6:C (1.58) BS02 GAL ? GO:0030246 ... O00214 21288902
    782 3ap6:D (1.58) BS02 GAL ? GO:0030246 ... O00214 21288902
    783 3ap7:A (1.53) BS02 GAL ? GO:0030246 ... O00214 21288902
    784 3ap9:A (1.33) BS02 GAL ? GO:0030246 ... O00214 21288902
    785 3ap9:A (1.33) BS03 GAL ? GO:0030246 ... O00214 21288902
    786 3asq:A (1.6) BS01 GAL ? N/A Q8JW44 22855491
    787 3asq:B (1.6) BS01 GAL ? N/A Q8JW44 22855491
    788 3asr:A (1.6) BS01 GAL ? N/A Q8JW44 22855491
    789 3asr:B (1.6) BS01 GAL ? N/A Q8JW44 22855491
    790 3ass:A (1.6) BS01 GAL ? N/A Q8JW44 22855491
    791 3ass:B (1.6) BS02 GAL ? N/A Q8JW44 22855491
    792 3ast:A (1.4) BS01 GAL ? N/A Q8JW44 22855491
    793 3ast:B (1.4) BS02 GAL ? N/A Q8JW44 22855491
    794 3ay4:A (2.2) BS02 GAL ? N/A P01857 22023369
    795 3ay4:B (2.2) BS02 GAL ? N/A P01857 22023369
    796 3aya:A (2.0) BS01 GAL ? GO:0030246 ... P17931 21949831 PDBbind: -logKd/Ki=4.33, Kd=47uM
    797 3aya:B (2.0) BS01 GAL ? GO:0030246 ... P17931 21949831
    798 3ayc:B (1.8) BS01 GAL ? GO:0030246 ... P17931 21949831 PDBbind: -logKd/Ki=4.24, Kd=57uM
    799 3ayd:A (1.9) BS01 GAL ? GO:0030246 ... P17931 21949831 PDBbind: -logKd/Ki=4.19, Kd=65uM
    800 3aye:A (2.0) BS02 GAL ? GO:0030246 ... P17931 21949831

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417