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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1v6l:D (2.5) BS02 GAL ? GO:0030246 ... P02872 14747696
    402 1v84:A (1.82) BS01 GAL 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    403 1v84:B (1.82) BS01 GAL 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    404 1vps:A (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    405 1vps:B (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    406 1vps:C (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    407 1vps:D (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    408 1vps:E (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    409 1vzu:A (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 15229192
    410 1vzu:B (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 15229192
    411 1vzx:A (1.97) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 15229192
    412 1vzx:B (1.97) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 15229192
    413 1w3a:A (2.65) BS02 GAL ? GO:0030246 ... Q7Z8V1 15687495
    414 1w3f:A (2.58) BS01 GAL ? GO:0030246 ... Q7Z8V1 15687495
    415 1w3g:A (2.68) BS01 GAL ? GO:0030246 ... Q7Z8V1 15687495
    416 1w3g:A (2.68) BS02 GAL ? GO:0030246 ... Q7Z8V1 15687495
    417 1w6m:A (2.3) BS01 GAL ? GO:0002317 ... P09382 15476813
    418 1w6m:B (2.3) BS01 GAL ? GO:0002317 ... P09382 15476813
    419 1w6o:A (1.9) BS02 GAL ? GO:0002317 ... P09382 15476813
    420 1w6o:B (1.9) BS02 GAL ? GO:0002317 ... P09382 15476813
    421 1w6p:A (1.8) BS01 GAL ? GO:0002317 ... P09382 15476813
    422 1w6p:B (1.8) BS01 GAL ? GO:0002317 ... P09382 15476813
    423 1w8n:A (2.1) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 15527797
    424 1w8o:A (1.7) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 15527797
    425 1wld:A (1.6) BS02 GAL ? GO:0005615 ... Q9YIC2 15740748
    426 1wlw:A (1.8) BS02 GAL ? GO:0005615 ... Q9YIC2 15740748
    427 1ww4:A (2.3) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 16051274
    428 1ww4:C (2.3) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 16051274
    429 1ww4:D (2.3) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 16051274
    430 1ww6:A (2.2) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 16051274
    431 1ww6:B (2.2) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 16051274
    432 1ww6:C (2.2) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 16051274
    433 1ww6:D (2.2) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 16051274
    434 1xc6:A (2.1) BS04 GAL 3.2.1.23 GO:0000272 ... Q700S9 15491613
    435 1y2u:A (1.85) BS01 GAL ? GO:0030246 ... Q00022 15596442
    436 1y2u:B (1.85) BS01 GAL ? GO:0030246 ... Q00022 15596442
    437 1y2v:A (1.9) BS01 GAL ? GO:0030246 ... Q00022 15596442
    438 1y2v:B (1.9) BS01 GAL ? GO:0030246 ... Q00022 15596442
    439 1y2w:A (1.74) BS01 GAL ? GO:0030246 ... Q00022 15596442
    440 1y2w:B (1.74) BS01 GAL ? GO:0030246 ... Q00022 15596442
    441 1y2x:A (2.36) BS01 GAL ? GO:0030246 ... Q00022 15596442
    442 1y2x:B (2.36) BS01 GAL ? GO:0030246 ... Q00022 15596442
    443 1y2x:C (2.36) BS01 GAL ? GO:0030246 ... Q00022 15596442
    444 1y2x:D (2.36) BS01 GAL ? GO:0030246 ... Q00022 15596442
    445 1yf8:B (2.8) BS01 GAL 3.2.2.22 N/A Q6ITZ3 15774467
    446 1yf8:B (2.8) BS02 GAL 3.2.2.22 N/A Q6ITZ3 15774467
    447 1yf8:B (2.8) BS03 GAL 3.2.2.22 N/A Q6ITZ3 15774467
    448 1z3v:A (1.61) BS02 GAL 3.2.1.-
    3.2.1.4    		 GO:0004553 ... Q7LIJ0 15819888
    449 1z45:A (1.85) BS01 GAL 5.1.3.2
    5.1.3.3    		 GO:0003824 ... P04397 15795221
    450 1zhj:A (1.59) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    451 1zi3:A (1.69) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    452 1zi4:A (1.85) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    453 1zi5:A (1.55) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    454 1ziz:A (1.49) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    455 1zj0:A (1.67) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    456 1zj1:A (1.65) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    457 1zj2:A (1.69) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    458 1zj3:A (1.69) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    459 2a8u:A (1.69) BS01 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    460 2aai:B (2.5) BS01 GAL 3.2.2.22 N/A P02879 1881880
    461 2aai:B (2.5) BS02 GAL 3.2.2.22 N/A P02879 1881880
    462 2b3f:A (1.56) BS01 GAL ? N/A Q72KX2 16904687 MOAD: Kd=0.94uM
    463 2b3f:B (1.56) BS01 GAL ? N/A Q72KX2 16904687 MOAD: Kd=0.94uM
    464 2b3f:C (1.56) BS01 GAL ? N/A Q72KX2 16904687 MOAD: Kd=0.94uM
    465 2b3f:D (1.56) BS01 GAL ? N/A Q72KX2 16904687 MOAD: Kd=0.94uM
    466 2b3f:E (1.56) BS01 GAL ? N/A Q72KX2 16904687 MOAD: Kd=0.94uM
    467 2b3f:F (1.56) BS01 GAL ? N/A Q72KX2 16904687 MOAD: Kd=0.94uM
    468 2bos:A (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    469 2bos:A (2.0) BS03 GAL ? GO:0005576 ... Q47644 10745005
    470 2bos:B (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    471 2bos:B (2.0) BS03 GAL ? GO:0005576 ... Q47644 10745005
    472 2bos:C (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    473 2bos:E (2.0) BS01 GAL ? GO:0005576 ... Q47644 10745005
    474 2bos:E (2.0) BS03 GAL ? GO:0005576 ... Q47644 10745005
    475 2bzd:A (2.0) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 16239725 MOAD: Kd~1mM
    476 2bzd:B (2.0) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 16239725 MOAD: Kd~1mM
    477 2bzd:C (2.0) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 16239725 MOAD: Kd~1mM
    478 2c5c:A (2.94) BS02 GAL ? GO:0005576 ... P69178 N/A
    479 2c5c:B (2.94) BS02 GAL ? GO:0005576 ... P69178 N/A
    480 2c5c:D (2.94) BS02 GAL ? GO:0005576 ... P69178 N/A
    481 2c5c:E (2.94) BS02 GAL ? GO:0005576 ... P69178 N/A
    482 2c5c:H (2.94) BS03 GAL ? GO:0005576 ... P69178 N/A
    483 2c5c:J (2.94) BS01 GAL ? GO:0005576 ... P69178 N/A
    484 2ccr:A (2.3) BS01 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    485 2ccr:A (2.3) BS02 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    486 2ccr:A (2.3) BS03 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    487 2ccr:A (2.3) BS04 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    488 2ccr:A (2.3) BS05 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    489 2ccr:B (2.3) BS01 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    490 2ccr:B (2.3) BS02 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    491 2ccr:B (2.3) BS03 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    492 2ccr:B (2.3) BS04 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    493 2cdo:A (1.64) BS01 GAL ? GO:0030246 ... Q6DN99 16601125
    494 2cdo:C (1.64) BS01 GAL ? GO:0030246 ... Q6DN99 16601125
    495 2cdo:D (1.64) BS01 GAL ? GO:0030246 ... Q6DN99 16601125
    496 2cdo:D (1.64) BS04 GAL ? GO:0030246 ... Q6DN99 16601125
    497 2cdp:A (1.59) BS01 GAL ? GO:0030246 ... Q6DN99 16601125
    498 2cdp:B (1.59) BS01 GAL ? GO:0030246 ... Q6DN99 16601125
    499 2cdp:C (1.59) BS01 GAL ? GO:0030246 ... Q6DN99 16601125
    500 2cdp:D (1.59) BS02 GAL ? GO:0030246 ... Q6DN99 16601125
    501 2cdp:D (1.59) BS03 GAL ? GO:0030246 ... Q6DN99 16601125
    502 2chb:D (2.0) BS01 GAL ? GO:0005515 ... P01556 9232653
    503 2chb:E (2.0) BS01 GAL ? GO:0005515 ... P01556 9232653
    504 2chb:F (2.0) BS01 GAL ? GO:0005515 ... P01556 9232653
    505 2chb:G (2.0) BS01 GAL ? GO:0005515 ... P01556 9232653
    506 2chb:H (2.0) BS01 GAL ? GO:0005515 ... P01556 9232653
    507 2d6m:A (1.6) BS02 GAL ? GO:0030246 ... O08573 16990264
    508 2d6m:B (1.6) BS02 GAL ? GO:0030246 ... O08573 16990264
    509 2d6n:A (2.0) BS01 GAL ? GO:0030246 ... O08573 16990264
    510 2d6n:B (2.0) BS01 GAL ? GO:0030246 ... O08573 16990264
    511 2d6o:X (1.78) BS01 GAL ? GO:0030246 ... O08573 16990264
    512 2d6p:A (2.7) BS01 GAL ? GO:0030246 ... O08573 16990264
    513 2d6p:B (2.7) BS01 GAL ? GO:0030246 ... O08573 16990264
    514 2drz:A (2.19) BS01 GAL ? N/A O96048 17234683
    515 2drz:B (2.19) BS01 GAL ? N/A O96048 17234683
    516 2ds0:A (1.8) BS01 GAL ? N/A O96048 17234683
    517 2ds0:B (1.8) BS01 GAL ? N/A O96048 17234683
    518 2dv9:A (2.48) BS01 GAL ? GO:0030246 ... P02872 17057347
    519 2dv9:B (2.48) BS01 GAL ? GO:0030246 ... P02872 17057347
    520 2dv9:B (2.48) BS02 GAL ? GO:0030246 ... P02872 17057347
    521 2dv9:C (2.48) BS01 GAL ? GO:0030246 ... P02872 17057347
    522 2dv9:C (2.48) BS02 GAL ? GO:0030246 ... P02872 17057347
    523 2dv9:D (2.48) BS01 GAL ? GO:0030246 ... P02872 17057347
    524 2dv9:D (2.48) BS02 GAL ? GO:0030246 ... P02872 17057347
    525 2dva:A (2.2) BS02 GAL ? GO:0030246 ... P02872 17057347
    526 2dva:B (2.2) BS02 GAL ? GO:0030246 ... P02872 17057347
    527 2dva:C (2.2) BS02 GAL ? GO:0030246 ... P02872 17057347
    528 2dva:D (2.2) BS02 GAL ? GO:0030246 ... P02872 17057347
    529 2dvb:A (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    530 2dvb:B (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    531 2dvb:C (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    532 2dvb:D (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    533 2dvd:A (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    534 2dvd:B (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    535 2dvd:C (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    536 2dvd:D (2.25) BS01 GAL ? GO:0030246 ... P02872 17057347
    537 2dwj:A (2.3) BS03 GAL 3.4.21.- GO:0005576 ... P24627 N/A
    538 2dyx:A (2.0) BS02 GAL 3.4.21.- GO:0005576 ... P24627 N/A
    539 2e9m:A (1.8) BS01 GAL 3.2.1.21
    3.2.1.45
    3.2.1.46    		 GO:0004336 ... Q9H227 17595169
    540 2ead:B (1.89) BS02 GAL 3.2.1.63 GO:0004560 ... Q6JV24 17459873
    541 2eae:A (1.8) BS01 GAL 3.2.1.63 GO:0004560 ... Q6JV24 17459873
    542 2eak:A (1.97) BS02 GAL ? GO:0030246 ... O00182 18005988
    543 2eak:C (1.97) BS02 GAL ? GO:0030246 ... O00182 18005988
    544 2eal:A (1.85) BS01 GAL ? GO:0030246 ... O00182 18005988
    545 2eal:B (1.85) BS01 GAL ? GO:0030246 ... O00182 18005988
    546 2euk:A (1.85) BS01 GAL ? GO:0005515 ... Q9NZD2 17105344 PDBbind: -logKd/Ki=6.60, Kd=0.25uM
    547 2evl:A (2.2) BS01 GAL ? GO:0005515 ... Q9NZD2 17105344 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    548 2g7c:A (2.0) BS01 GAL 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    549 2g7c:A (2.0) BS03 GAL 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    550 2g7c:B (2.0) BS01 GAL 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    551 2g7c:B (2.0) BS03 GAL 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    552 2gal:A (2.0) BS01 GAL ? GO:0005515 ... P47929 9760227
    553 2gal:B (2.0) BS01 GAL ? GO:0005515 ... P47929 9760227
    554 2gam:A (2.7) BS01 GAL 2.4.1.102 GO:0000139 ... Q09324 16829524
    555 2gam:B (2.7) BS01 GAL 2.4.1.102 GO:0000139 ... Q09324 16829524
    556 2gam:C (2.7) BS01 GAL 2.4.1.102 GO:0000139 ... Q09324 16829524
    557 2gam:D (2.7) BS01 GAL 2.4.1.102 GO:0000139 ... Q09324 16829524
    558 2gft:A (2.3) BS01 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 N/A
    559 2gft:A (2.3) BS02 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 N/A
    560 2gft:A (2.3) BS03 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 N/A
    561 2gft:B (2.3) BS01 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 N/A
    562 2gft:B (2.3) BS02 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 N/A
    563 2gft:B (2.3) BS03 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 N/A
    564 2gj7:A (5.0) BS02 GAL ? N/A P01857 16646632
    565 2gj7:B (5.0) BS02 GAL ? N/A P01857 16646632
    566 2h4i:A (2.55) BS01 GAL 3.4.21.- GO:0005576 ... P24627 N/A
    567 2iho:A (2.41) BS01 GAL ? GO:0046872 ... Q8X123 17442345
    568 2iho:A (2.41) BS02 GAL ? GO:0046872 ... Q8X123 17442345
    569 2iho:A (2.41) BS03 GAL ? GO:0046872 ... Q8X123 17442345
    570 2iho:A (2.41) BS04 GAL ? GO:0046872 ... Q8X123 17442345
    571 2ihz:A (2.0) BS02 GAL 2.4.99.4 GO:0016757 ... Q15KI8 17487984
    572 2ilv:A (2.27) BS01 GAL 2.4.99.4 GO:0016757 ... Q15KI8 17487984
    573 2iwg:A (2.35) BS01 GAL ? N/A P01857 17400754
    574 2iwg:D (2.35) BS01 GAL ? N/A P01857 17400754
    575 2iy8:A (2.5) BS02 GAL ? N/A Q9CP67 18304450
    576 2j1a:A (1.49) BS01 GAL 3.2.1.169 N/A Q0TR53 16990278 MOAD: Kd=980uM
    577 2j1e:A (2.4) BS01 GAL 3.2.1.169 N/A Q0TR53 16990278
    578 2j5z:A (1.73) BS02 GAL ? N/A O75636 17215869
    579 2j6e:A (3.0) BS02 GAL ? N/A P01857 17395205
    580 2j6e:B (3.0) BS02 GAL ? N/A P01857 17395205
    581 2j74:A (2.6) BS01 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    582 2j74:A (2.6) BS02 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    583 2j74:A (2.6) BS03 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    584 2j74:A (2.6) BS04 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    585 2j74:B (2.6) BS01 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    586 2j74:B (2.6) BS02 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    587 2j74:B (2.6) BS03 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    588 2j74:B (2.6) BS04 GAL 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 19089956
    589 2j7m:A (2.3) BS01 GAL 3.2.1.169 N/A Q0TR53 16990278
    590 2ll4:M (-1.00) BS01 GAL ? GO:0005576 ... Q9XZH7 22399295
    591 2nc4:A (-1.00) BS01 GAL N/A N/A N/A 27249581
    592 2nmn:A (2.45) BS02 GAL ? GO:0030246 ... P17931 17327679
    593 2nmo:A (1.35) BS02 GAL ? GO:0030246 ... P17931 17327679
    594 2nn8:A (1.35) BS02 GAL ? GO:0030246 ... P17931 17327679
    595 2nn8:A (1.35) BS04 GAL ? GO:0030246 ... P17931 17327679
    596 2osx:A (1.1) BS02 GAL 3.2.1.123 GO:0000272 ... O33853 17329247
    597 2osy:A (2.1) BS02 GAL 3.2.1.123 GO:0000272 ... O33853 17329247
    598 2osy:B (2.1) BS02 GAL 3.2.1.123 GO:0000272 ... O33853 17329247
    599 2ox9:A (1.95) BS02 GAL ? N/A Q8K4Q8 17420244
    600 2ox9:B (1.95) BS01 GAL ? N/A Q8K4Q8 17420244
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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