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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a3k:A (2.1) BS01 GAL ? GO:0030246 ... P17931 9582341
    2 1a78:A (2.0) BS02 GAL ? GO:0005576 ... P56217 10861929
    3 1a78:B (2.0) BS02 GAL ? GO:0005576 ... P56217 10861929
    4 1ax1:A (1.95) BS02 GAL ? GO:0030246 ... P16404 9545381
    5 1ax2:A (1.95) BS01 GAL ? GO:0030246 ... P16404 9545381
    6 1axz:A (1.95) BS02 GAL ? GO:0030246 ... P16404 9545381 MOAD: Ka=1570M^-1
    PDBbind: -logKd/Ki=3.20, Kd=0.637mM
    7 1bos:A (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    8 1bos:A (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    9 1bos:B (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    10 1bos:B (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    11 1bos:C (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    12 1bos:C (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    13 1bos:D (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    14 1bos:D (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    15 1bos:E (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    16 1bos:E (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    17 1bos:F (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    18 1bos:F (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    19 1bos:G (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    20 1bos:G (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    21 1bos:H (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    22 1bos:H (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    23 1bos:I (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    24 1bos:I (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    25 1bos:J (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    26 1bos:J (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    27 1bos:K (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    28 1bos:K (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    29 1bos:L (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    30 1bos:L (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    31 1bos:M (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    32 1bos:M (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    33 1bos:N (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    34 1bos:N (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    35 1bos:O (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    36 1bos:O (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    37 1bos:P (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    38 1bos:P (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    39 1bos:Q (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    40 1bos:Q (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    41 1bos:R (2.8) BS03 GAL ? GO:0005576 ... P69179 9485303
    42 1bos:S (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    43 1bos:S (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    44 1bos:T (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    45 1bos:T (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    46 1bzw:A (2.7) BS01 GAL ? GO:0030246 ... P02872 N/A
    47 1bzw:B (2.7) BS02 GAL ? GO:0030246 ... P02872 N/A
    48 1bzw:C (2.7) BS01 GAL ? GO:0030246 ... P02872 N/A
    49 1bzw:D (2.7) BS02 GAL ? GO:0030246 ... P02872 N/A
    50 1c1l:A (1.5) BS02 GAL ? GO:0005615 ... P26788 10545323
    51 1c4q:A (1.52) BS01 GAL ? GO:0005576 ... P69179 N/A
    52 1c4q:B (1.52) BS01 GAL ? GO:0005576 ... P69179 N/A
    53 1c4q:C (1.52) BS01 GAL ? GO:0005576 ... P69179 N/A
    54 1c4q:D (1.52) BS01 GAL ? GO:0005576 ... P69179 N/A
    55 1c4q:E (1.52) BS01 GAL ? GO:0005576 ... P69179 N/A
    56 1ciw:A (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    57 1ciw:B (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    58 1ciw:C (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    59 1ciw:D (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    60 1cly:H (2.5) BS01 GAL N/A N/A N/A 7664109
    61 1clz:H (2.8) BS01 GAL ? N/A P03987 7664109
    62 1cqf:B (2.2) BS03 GAL ? GO:0005576 ... P69179 N/A
    63 1cr7:A (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    64 1cr7:B (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    65 1cr7:E (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    66 1ct1:F (2.3) BS01 GAL ? GO:0005515 ... P01556 9232653
    67 1ct1:G (2.3) BS02 GAL ? GO:0005515 ... P01556 9232653
    68 1d1i:A (1.7) BS01 GAL ? GO:0005576 ... P69179 N/A
    69 1d1i:A (1.7) BS03 GAL ? GO:0005576 ... P69179 N/A
    70 1d1i:B (1.7) BS01 GAL ? GO:0005576 ... P69179 N/A
    71 1d1i:C (1.7) BS01 GAL ? GO:0005576 ... P69179 N/A
    72 1d1i:D (1.7) BS01 GAL ? GO:0005576 ... P69179 N/A
    73 1d1i:E (1.7) BS01 GAL ? GO:0005576 ... P69179 N/A
    74 1d1k:A (2.0) BS01 GAL ? GO:0005576 ... P69178 N/A
    75 1d1k:B (2.0) BS01 GAL ? GO:0005576 ... P69178 N/A
    76 1d1k:C (2.0) BS01 GAL ? GO:0005576 ... P69178 N/A
    77 1d1k:D (2.0) BS01 GAL ? GO:0005576 ... P69178 N/A
    78 1d1k:E (2.0) BS01 GAL ? GO:0005576 ... P69178 N/A
    79 1d6q:A (1.96) BS01 GAL 3.2.1.17 GO:0003796 ... P61626 10630988
    80 1dbn:A (2.75) BS02 GAL ? GO:0030246 ... P93248 10747930
    81 1dbn:B (2.75) BS02 GAL ? GO:0030246 ... P93248 10747930
    82 1diw:A (2.0) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 10722735
    83 1dll:A (1.8) BS02 GAL 3.4.24.68 GO:0005576 ... P04958 10722735
    84 1dn2:A (2.7) BS03 GAL ? N/A P01857 10678837
    85 1dn2:B (2.7) BS03 GAL ? N/A P01857 10678837
    86 1dva:L (3.0) BS02 GAL 3.4.21.21 GO:0005509 ... P08709 10761907
    87 1dzq:A (2.85) BS03 GAL ? GO:0030246 ... Q9FVF8 10966800
    88 1dzq:C (2.85) BS03 GAL ? GO:0030246 ... Q9FVF8 10966800
    89 1e4k:B (3.2) BS02 GAL ? N/A P01857 10917521
    90 1euu:A (2.5) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 8591030
    91 1fc1:A (2.9) BS01 GAL ? N/A P01857 7236608
    92 1fc1:B (2.9) BS01 GAL ? N/A P01857 7236608
    93 1fc2:D (2.8) BS01 GAL ? N/A P01857 7236608
    94 1fgg:A (2.3) BS01 GAL 2.4.1.135 GO:0015018 ... O94766 10946001
    95 1fgg:A (2.3) BS02 GAL 2.4.1.135 GO:0015018 ... O94766 10946001
    96 1frt:C (4.5) BS01 GAL N/A N/A N/A 7969498
    97 1fv2:A (2.5) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 11418600
    98 1fv3:A (2.3) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 11418600
    99 1fv3:B (2.3) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 11418600
    100 1fyu:A (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    101 1fyu:B (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    102 1g1r:A (3.4) BS01 GAL ? N/A P16109 11081633
    103 1g1r:B (3.4) BS01 GAL ? N/A P16109 11081633
    104 1g1r:D (3.4) BS01 GAL ? N/A P16109 11081633
    105 1g1s:A (1.9) BS02 GAL ? N/A P16109 11081633
    106 1g1s:B (1.9) BS02 GAL ? N/A P16109 11081633
    107 1g1t:A (1.5) BS01 GAL ? N/A P16581 11081633
    108 1g8z:D (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    109 1g8z:F (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    110 1g8z:G (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    111 1g8z:H (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    112 1g93:A (2.5) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 11179209
    113 1g9f:A (2.5) BS01 GAL ? GO:0030246 ... P05046 11491289
    114 1gan:A (2.23) BS01 GAL ? GO:0005576 ... P56217 10861929
    115 1gan:B (2.23) BS01 GAL ? GO:0005576 ... P56217 10861929
    116 1gca:A (1.7) BS01 GAL ? GO:0006935 ... P23905 8240551 MOAD: Kd=0.2uM
    PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    117 1glg:A (2.0) BS01 GAL ? GO:0005509 ... P0AEE5 8161535
    118 1gsl:A (2.0) BS01 GAL ? GO:0030246 ... P24146 8478943
    119 1gwv:A (2.5) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    120 1gwv:B (2.5) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    121 1gx0:B (1.8) BS03 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    122 1gx4:A (1.46) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    123 1gx4:B (1.46) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    124 1gz9:A (1.7) BS02 GAL ? GO:0030246 ... P83410 12139934
    125 1gzc:A (1.58) BS02 GAL ? GO:0030246 ... P83410 12139934
    126 1gzw:A (1.7) BS02 GAL ? GO:0002317 ... P09382 15476813
    127 1gzw:B (1.7) BS02 GAL ? GO:0002317 ... P09382 15476813
    128 1h3v:A (3.1) BS01 GAL ? N/A P01857 12527303
    129 1h3v:B (3.1) BS02 GAL ? N/A P01857 12527303
    130 1hgg:A (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    131 1hgg:C (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    132 1hgg:E (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    133 1hlc:A (2.9) BS02 GAL ? GO:0005515 ... P05162 8262940
    134 1hlc:B (2.9) BS02 GAL ? GO:0005515 ... P05162 8262940
    135 1hwm:B (2.8) BS01 GAL 3.2.2.22 N/A Q9AVR2 11288182
    136 1hwn:B (2.8) BS01 GAL 3.2.2.22 N/A Q9AVR2 11288182
    137 1hwn:B (2.8) BS02 GAL 3.2.2.22 N/A Q9AVR2 11288182
    138 1hwo:B (2.9) BS01 GAL 3.2.2.22 N/A Q9AVR2 11288182
    139 1hwp:B (3.1) BS02 GAL 3.2.2.22 N/A Q9AVR2 11288182
    140 1hzh:H (2.7) BS01 GAL ? N/A P01857 11498595
    141 1igt:B (2.8) BS01 GAL ? GO:0034987 ... P01863 9048542
    142 1igt:D (2.8) BS01 GAL ? GO:0034987 ... P01863 9048542
    143 1igy:B (3.2) BS01 GAL ? N/A P01869 9480774
    144 1igy:D (3.2) BS01 GAL ? N/A P01869 9480774
    145 1is3:A (1.45) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    146 1is4:A (1.9) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    147 1isz:A (2.0) BS01 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    148 1isz:A (2.0) BS02 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    149 1isz:B (2.0) BS01 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    150 1isz:B (2.0) BS02 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    151 1it0:A (2.0) BS01 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    152 1it0:A (2.0) BS02 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    153 1it0:B (2.0) BS01 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    154 1it0:B (2.0) BS02 GAL 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    155 1j8r:A (1.8) BS01 GAL ? GO:0007155 ... Q47450 11440716
    156 1jlx:A (2.2) BS01 GAL ? N/A Q71QF2 9334739 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    157 1jlx:B (2.2) BS01 GAL ? N/A Q71QF2 9334739 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    158 1jsh:A (2.4) BS01 GAL ? GO:0019031 ... Q91CD4 11562490
    159 1jsi:A (2.4) BS02 GAL ? GO:0019031 ... Q91CD4 11562490
    160 1jyn:A (1.8) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    161 1jyn:B (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    162 1jyn:C (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    163 1jyn:D (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    164 1jz7:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    165 1jz7:A (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    166 1jz7:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    167 1jz7:B (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    168 1jz7:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    169 1jz7:C (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    170 1jz7:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    171 1jz7:D (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    172 1jz8:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    173 1jz8:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    174 1jz8:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    175 1jz8:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    176 1jzn:A (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    177 1jzn:B (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    178 1jzn:C (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    179 1jzn:D (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    180 1jzn:E (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    181 1kjl:A (1.4) BS01 GAL ? GO:0030246 ... P17931 15701008
    182 1kjr:A (1.55) BS01 GAL ? GO:0030246 ... P17931 15701008 PDBbind: -logKd/Ki=6.06, Kd=0.88uM
    183 1knm:A (1.2) BS01 GAL 3.2.1.8 N/A P26514 11914070
    184 1knm:A (1.2) BS02 GAL 3.2.1.8 N/A P26514 11914070
    185 1kwk:A (2.2) BS01 GAL 3.2.1.23 GO:0004565 ... O69315 12215416
    186 1l6x:A (1.65) BS02 GAL ? N/A P01857 10754313
    187 1led:A (2.0) BS01 GAL ? GO:0030246 ... P24146 8478943
    188 1lt3:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    189 1lt3:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    190 1lt3:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    191 1lt3:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    192 1lt3:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    193 1lt4:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    194 1lt4:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    195 1lt4:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    196 1lt4:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    197 1lt4:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    198 1lt5:F (1.7) BS02 GAL ? GO:0005576 ... P32890 9384564
    199 1lta:D (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    200 1lta:E (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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