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BioLiP
Download all results in tab-seperated text for 96 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c7z:A (2.6) BS01 G3H 2.7.1.105
    3.1.3.46    		 GO:0003824 ... P07953 N/A
    2 1c7z:B (2.6) BS01 G3H 2.7.1.105
    3.1.3.46    		 GO:0003824 ... P07953 N/A
    3 1glc:G (2.65) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    4 1gld:G (2.93) BS02 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    5 1gle:G (2.94) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    6 1m7p:A (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    7 1m7p:B (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    8 1nqa:O (2.2) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    9 1nqa:P (2.2) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    10 1nqa:Q (2.2) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    11 1nqa:R (2.2) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    12 1nqo:A (2.01) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    13 1nqo:C (2.01) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    14 1nqo:O (2.01) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    15 1nqo:Q (2.01) BS02 G3H 1.2.1.12 GO:0000166 ... P00362 12569100
    16 1qi1:A (3.0) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 10864505
    17 1qi1:C (3.0) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 10864505
    18 1qi1:D (3.0) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 10864505
    19 1uod:A (1.9) BS01 G3H 2.7.1.121 GO:0004371 ... P76015 15476397 PDBbind: -logKd/Ki=3.11, Kd=0.78mM
    20 1uod:B (1.9) BS01 G3H 2.7.1.121 GO:0004371 ... P76015 15476397
    21 1uxu:A (2.25) BS03 G3H 1.2.1.90 GO:0000166 ... O57693 15288789
    22 1z82:B (2.0) BS01 G3H 1.1.1.94 GO:0000166 ... A0A0F6AK91 N/A
    23 2clk:A (1.5) BS01 G3H 4.2.1.20 GO:0000162 ... P00929 17559195 MOAD: Kd=164uM
    PDBbind: -logKd/Ki=3.79, Kd=164uM
    24 2esd:A (2.55) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    25 2esd:B (2.55) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    26 2esd:C (2.55) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    27 2esd:D (2.55) BS02 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    28 2okg:B (1.65) BS01 G3H ? GO:0030246 ... O32253 18554327 MOAD: Kd=63.29uM
    29 2qe0:A (2.19) BS01 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    30 2qe0:B (2.19) BS01 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    31 2qe0:C (2.19) BS01 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    32 2qe0:D (2.19) BS01 G3H 1.2.1.9 GO:0008886 ... Q59931 16503652
    33 3cif:A (2.0) BS01 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    34 3cif:B (2.0) BS01 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    35 3cif:C (2.0) BS02 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    36 3cif:D (2.0) BS01 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    37 3cmc:O (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    38 3cmc:P (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    39 3cmc:Q (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    40 3cmc:R (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    41 3lc2:O (2.8) BS01 G3H 1.2.1.12 GO:0000166 ... Q6GIL8 20620151
    42 3lc2:P (2.8) BS01 G3H 1.2.1.12 GO:0000166 ... Q6GIL8 20620151
    43 3lc2:Q (2.8) BS01 G3H 1.2.1.12 GO:0000166 ... Q6GIL8 20620151
    44 3lc2:R (2.8) BS01 G3H 1.2.1.12 GO:0000166 ... Q6GIL8 20620151
    45 3qrh:A (2.0) BS01 G3H 4.1.2.13 GO:0004332 ... Q8SSM8 N/A
    46 4i3w:A (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    47 4i3w:B (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    48 4i3w:C (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    49 4i3w:D (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    50 4i3w:E (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    51 4i3w:F (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    52 4i3w:G (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    53 4i3w:H (2.24) BS01 G3H 1.2.1.- GO:0000166 ... Q92UV7 24361046
    54 4zex:A (2.0) BS02 G3H 3.8.1.- GO:0003824 ... Q8IJ74 26327372
    55 5ff7:A (2.092) BS02 G3H 4.1.2.40 GO:0003824 ... P63705 N/A
    56 5ff7:C (2.092) BS03 G3H 4.1.2.40 GO:0003824 ... P63705 N/A
    57 5jya:A (2.85) BS02 G3H 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    58 5jya:B (2.85) BS02 G3H 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    59 5jya:C (2.85) BS02 G3H 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    60 5jya:D (2.85) BS02 G3H 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    61 5tk3:A (1.83) BS01 G3H 4.1.2.13 GO:0003779 ... Q8I8I2 28972169
    62 5tkc:A (1.779) BS01 G3H 4.1.2.13 GO:0003779 ... Q8I8I2 28972169
    63 5tkl:A (1.751) BS02 G3H 4.1.2.13 GO:0003779 ... Q8I8I2 28972169
    64 5uck:A (1.782) BS03 G3H 4.1.2.13 GO:0004332 ... P56109 29593097
    65 5uck:B (1.782) BS03 G3H 4.1.2.13 GO:0004332 ... P56109 29593097
    66 5ucp:B (1.444) BS04 G3H 4.1.2.13 GO:0004332 ... P56109 29593097
    67 5ud0:B (1.647) BS04 G3H 4.1.2.13 GO:0004332 ... P56109 29593097
    68 6z9i:B (1.86) BS01 G3H 4.1.2.4 GO:0003824 ... P0A6L0 33147349
    69 7c5k:O (2.68) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    70 7c5k:P (2.68) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    71 7c5m:P (1.8) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    72 7c5m:Q (1.8) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    73 7c5m:R (1.8) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    74 7c5p:O (2.35) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    75 7c5p:P (2.35) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    76 7c5p:Q (2.35) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    77 7c5p:R (2.35) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    78 7c5q:O (2.13) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    79 7c5q:Q (2.13) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    80 7c5q:R (2.13) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    81 7c5r:P (2.31) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    82 7c5r:Q (2.31) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    83 7c5r:R (2.31) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    84 7c7k:O (1.77) BS01 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    85 7c7k:P (1.77) BS01 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    86 7c7k:Q (1.77) BS02 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    87 7c7k:R (1.77) BS01 G3H 1.2.1.- GO:0000166 ... A0A140NCK4 34827563
    88 7v6f:A (2.98) BS02 G3H 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    89 8hrp:A (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    90 8hrp:B (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    91 8hrp:C (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    92 8hrp:D (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    93 8hrp:E (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    94 8hrp:F (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    95 8hrp:G (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    96 8hrp:H (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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