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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c47:A (2.7) BS01 G16 5.4.2.2 GO:0000287 ... P00949 N/A
    2 1o03:A (1.4) BS01 G16 5.4.2.6 GO:0000287 ... P71447 12637673
    3 1o08:A (1.2) BS01 G16 5.4.2.6 GO:0000287 ... P71447 12637673
    4 2fkf:A (2.0) BS01 G16 5.4.2.2
    5.4.2.8    		 GO:0000287 ... P26276 16595672 MOAD: Kd=1.2mM
    PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    5 2fkm:X (1.9) BS01 G16 5.4.2.2
    5.4.2.8    		 GO:0000287 ... P26276 16595672
    6 3ot9:A (1.75) BS04 G16 5.4.2.7 GO:0000287 ... Q818Z9 21193409
    7 3un3:A (1.8) BS04 G16 5.4.2.7 GO:0000287 ... Q818Z9 22329805 MOAD: Kd=0.23uM
    8 3un3:B (1.8) BS03 G16 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    9 3un3:C (1.8) BS04 G16 5.4.2.7 GO:0000287 ... Q818Z9 22329805 MOAD: Kd=0.23uM
    10 3uo0:A (2.3) BS04 G16 5.4.2.7 GO:0000287 ... Q818Z9 22329805 MOAD: Kd=0.47uM
    11 4foi:A (2.4) BS02 G16 2.7.1.1 GO:0001678 ... P19367 N/A
    12 4foi:A (2.4) BS04 G16 2.7.1.1 GO:0001678 ... P19367 N/A
    13 4foi:B (2.4) BS02 G16 2.7.1.1 GO:0001678 ... P19367 N/A
    14 4foi:B (2.4) BS04 G16 2.7.1.1 GO:0001678 ... P19367 N/A
    15 5kl0:A (1.853) BS01 G16 N/A GO:0000287 ... N/A 27567706
    16 5o9x:A (1.9) BS01 G16 N/A GO:0004610 ... N/A 29967067
    17 6nnt:A (1.45) BS01 G16 N/A GO:0000287 ... N/A 31041362
    18 6nnu:A (1.46) BS02 G16 N/A GO:0000287 ... N/A 31041362
    19 7o1b:A (3.08) BS03 G16 5.4.2.8 GO:0004615 ... O15305 34859900
    20 7o4g:A (2.66) BS03 G16 5.4.2.8 GO:0004615 ... O15305 34859900
    21 7o58:A (1.97) BS01 G16 5.4.2.8 GO:0004615 ... O15305 34859900
    22 7p5o:A (2.48) BS01 G16 5.4.2.2 GO:0000287 ... Q4WY53 N/A
    23 7p5o:B (2.48) BS01 G16 5.4.2.2 GO:0000287 ... Q4WY53 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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