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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2gag:A (1.85) BS01 FOA ? GO:0000166 ... Q3ZDQ8 16820168
    2 2gag:B (1.85) BS04 FOA 1.5.3.24 GO:0000166 ... Q3ZDR0 16820168
    3 2gah:B (2.0) BS03 FOA 1.5.3.24 GO:0000166 ... Q3ZDR0 16820168
    4 2gf3:A (1.3) BS02 FOA 1.5.3.1 GO:0005737 ... P40859 N/A
    5 2gf3:A (1.3) BS03 FOA 1.5.3.1 GO:0005737 ... P40859 N/A
    6 2gf3:B (1.3) BS01 FOA 1.5.3.1 GO:0005737 ... P40859 N/A
    7 2gf3:B (1.3) BS03 FOA 1.5.3.1 GO:0005737 ... P40859 N/A
    8 4rm3:A (1.76) BS01 FOA ? GO:0000166 ... Q93TK0 26378464
    9 4rm3:B (1.76) BS01 FOA ? GO:0000166 ... Q93TK0 26378464
    10 5wic:B (2.55) BS01 FOA ? GO:0016020 ... Q17U16 29097752 PDBbind: -logKd/Ki=4.64, Kd=23uM
    11 5wic:B (2.55) BS02 FOA ? GO:0016020 ... Q17U16 29097752 PDBbind: -logKd/Ki=4.64, Kd=23uM
    12 5yyf:A (1.903) BS03 FOA ? GO:0006355 ... P42568 30374167 PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    13 5yyf:C (1.903) BS03 FOA ? GO:0006355 ... P42568 30374167
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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