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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 154 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2fz5:A (-1.00) BS01 FNR ? GO:0009055 ... P00321 2253614
    2 2isk:A (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    3 2isk:A (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    4 2isk:B (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    5 2isk:B (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    6 2isk:C (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    7 2isk:C (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    8 2isk:D (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    9 2isk:D (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    10 2isk:E (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    11 2isk:E (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    12 2isk:F (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    13 2isk:F (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    14 2isk:G (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    15 2isk:G (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    16 2isk:H (2.1) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    17 2isk:H (2.1) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    18 2isl:A (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    19 2isl:A (2.9) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    20 2isl:B (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    21 2isl:B (2.9) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    22 2isl:C (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    23 2isl:C (2.9) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    24 2isl:D (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    25 2isl:D (2.9) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    26 2isl:E (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    27 2isl:E (2.9) BS03 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    28 2isl:F (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    29 2isl:F (2.9) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    30 2isl:G (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    31 2isl:G (2.9) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    32 2isl:H (2.9) BS01 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    33 2isl:H (2.9) BS02 FNR 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    34 2ymv:A (1.6) BS01 FNR ? GO:0016491 ... A0R2V4 23148223
    35 2zrv:A (2.3) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    36 2zrv:B (2.3) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    37 2zrv:C (2.3) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    38 2zrv:D (2.3) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    39 2zry:A (2.64) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    40 2zry:B (2.64) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    41 2zry:C (2.64) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    42 2zry:D (2.64) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    43 2zrz:A (2.9) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    44 2zrz:B (2.9) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    45 2zrz:C (2.9) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    46 2zrz:D (2.9) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 19158086
    47 3b05:A (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    48 3b05:B (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    49 3b05:C (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    50 3b05:D (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    51 3b06:A (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    52 3b06:B (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    53 3b06:C (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    54 3b06:D (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    55 3n19:B (1.75) BS01 FNR 1.6.99.1 GO:0000166 ... Q3ZDM6 20826164
    56 3n19:D (1.75) BS01 FNR 1.6.99.1 GO:0000166 ... Q3ZDM6 20826164
    57 3u7r:A (1.4) BS01 FNR ? GO:0005829 ... A1B9E3 24817153
    58 3u7r:A (1.4) BS02 FNR ? GO:0005829 ... A1B9E3 24817153
    59 3u7r:B (1.4) BS01 FNR ? GO:0005829 ... A1B9E3 24817153
    60 3u7r:B (1.4) BS02 FNR ? GO:0005829 ... A1B9E3 24817153
    61 3vkj:A (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    62 3vkj:B (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    63 3vkj:C (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    64 3vkj:D (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    65 3zqu:A (1.5) BS01 FNR 2.5.1.129 GO:0003824 ... Q9HX08 22102023
    66 4hnb:B (2.34) BS01 FNR ? GO:0000166 ... M1E1F8 23252338
    67 4n02:A (1.4) BS03 FNR 5.3.3.2 GO:0000287 ... B2ILS5 24910111
    68 4rje:A (1.65) BS01 FNR 1.1.3.- GO:0000166 ... Q44467 25423902
    69 4rje:B (1.65) BS01 FNR 1.1.3.- GO:0000166 ... Q44467 25423902
    70 4rje:C (1.65) BS01 FNR 1.1.3.- GO:0000166 ... Q44467 25423902
    71 4rje:D (1.65) BS01 FNR 1.1.3.- GO:0000166 ... Q44467 25423902
    72 4utk:A (1.44) BS01 FNR 1.6.99.1 GO:0000166 ... Q3ZDM6 N/A
    73 4utl:A (1.229) BS01 FNR 1.6.99.1 GO:0000166 ... Q3ZDM6 N/A
    74 4utm:A (1.09) BS01 FNR 1.6.99.1 GO:0000166 ... Q3ZDM6 N/A
    75 4xp7:A (1.9) BS01 FNR 1.3.1.91 GO:0008033 ... Q9NX74 26143927
    76 5cpl:A (1.57) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    77 5cpl:B (1.57) BS03 FNR ? GO:0000166 ... Q9R9V9 26727612
    78 5cpm:A (1.5) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    79 5cpm:B (1.5) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    80 5cpn:A (1.8) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    81 5cpn:B (1.8) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    82 5cpo:A (1.65) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    83 5cpo:B (1.65) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    84 5k0r:A (1.45) BS01 FNR 1.5.1.30 GO:0000166 ... Q8EBV3 28869767
    85 5k9c:A (1.66) BS01 FNR 1.3.5.2 GO:0004151 ... Q02127 27994748
    86 5k9d:A (1.7) BS01 FNR 1.3.5.2 GO:0004151 ... Q02127 27994748
    87 5lgz:A (1.5) BS01 FNR ? GO:0000166 ... P71278 28177310
    88 5lnj:A (1.16) BS01 FNR ? GO:0000166 ... A0A1X0ZT96 N/A
    89 5qib:A (1.48) BS01 FNR 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 N/A
    90 6m73:A (1.7) BS01 FNR 1.1.3.15 GO:0004459 ... I6SYK8 N/A
    91 6m74:A (1.52) BS01 FNR 1.1.3.15 GO:0004459 ... I6SYK8 N/A
    92 6qlh:A (1.57) BS02 FNR 2.5.1.129 GO:0000166 ... A0A072ZCW8 31142738
    93 6qli:A (1.99) BS02 FNR 2.5.1.129 GO:0000166 ... A0A072ZCW8 31142738
    94 6qll:A (1.56) BS02 FNR 2.5.1.129 GO:0000166 ... A0A072ZCW8 31142738
    95 7jh4:A (2.0) BS01 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    96 7jh4:A (2.0) BS02 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    97 7jh4:B (2.0) BS01 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    98 7jh4:B (2.0) BS02 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    99 7jh4:C (2.0) BS01 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    100 7jh4:D (2.0) BS01 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    101 7jh4:D (2.0) BS02 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    102 7jh4:E (2.0) BS01 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    103 7jh4:E (2.0) BS02 FNR 1.-.-.- GO:0005829 ... Q2FVA4 32887719
    104 7lju:A (1.87) BS08 FNR 1.3.1.2 GO:0000166 ... Q28943 33755421
    105 7lju:B (1.87) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 33755421
    106 7lju:C (1.87) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 33755421
    107 7lju:D (1.87) BS08 FNR 1.3.1.2 GO:0000166 ... Q28943 33755421
    108 7m32:A (1.82) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 34032117
    109 7m32:B (1.82) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 34032117
    110 7m32:C (1.82) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 34032117
    111 7m32:D (1.82) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 34032117
    112 7mms:B (1.91) BS02 FNR 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    113 7mms:C (1.91) BS02 FNR 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    114 7mms:D (1.91) BS01 FNR 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    115 7mms:E (1.91) BS01 FNR ? GO:0000166 ... F2I8Y0 N/A
    116 7mms:F (1.91) BS01 FNR ? GO:0000166 ... F2I8Y0 N/A
    117 7mms:G (1.91) BS01 FNR ? GO:0000166 ... F2I8Y0 N/A
    118 7mms:H (1.91) BS01 FNR ? GO:0000166 ... F2I8Y0 N/A
    119 7z3e:B (2.0) BS01 FNR ? GO:0000166 ... Q81G57 36083619
    120 8e5h:A (1.27) BS01 FNR ? GO:0010181 ... V4RWU7 N/A
    121 8f5w:A (1.97) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 36681231
    122 8f5w:B (1.97) BS08 FNR 1.3.1.2 GO:0000166 ... Q28943 36681231
    123 8f5w:C (1.97) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 36681231
    124 8f5w:D (1.97) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 36681231
    125 8f61:A (2.14) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 36681231
    126 8f61:D (2.14) BS07 FNR 1.3.1.2 GO:0000166 ... Q28943 36681231
    127 8prw:G (1.9) BS02 FNR 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    128 8prw:H (1.9) BS02 FNR 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    129 8prw:I (1.9) BS02 FNR 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    130 8prw:J (1.9) BS02 FNR 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    131 8prw:K (1.9) BS02 FNR 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    132 8prw:L (1.9) BS02 FNR 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    133 8qh4:B (1.96) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    134 8qh4:D (1.96) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    135 8qh7:B (1.85) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    136 8qh7:D (1.85) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    137 8qhk:B (1.95) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    138 8qhk:D (1.95) BS02 FNR 7.1.1.- GO:0008137 ... O66841 38503292
    139 9fdv:B (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    140 9fdv:D (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    141 9fe0:B (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    142 9fe0:D (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    143 9fe5:B (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    144 9fe5:D (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    145 9fe8:B (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    146 9fe8:D (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    147 9fea:B (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    148 9fea:D (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    149 9fih:B (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    150 9fih:D (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    151 9fij:B (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    152 9fij:D (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    153 9fil:B (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    154 9fil:D (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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