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BioLiP
Download all results in tab-seperated text for 3066 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 6y45:A (1.68) BS02 FES ? GO:0003700 ... F2RGC9 32078310
    1802 6y45:B (1.68) BS01 FES ? GO:0003700 ... F2RGC9 32078310
    1803 6y45:B (1.68) BS02 FES ? GO:0003700 ... F2RGC9 32078310
    1804 6y45:C (1.68) BS01 FES ? GO:0003700 ... F2RGC9 32078310
    1805 6y45:C (1.68) BS02 FES ? GO:0003700 ... F2RGC9 32078310
    1806 6y45:D (1.68) BS01 FES ? GO:0003700 ... F2RGC9 32078310
    1807 6y45:D (1.68) BS02 FES ? GO:0003700 ... F2RGC9 32078310
    1808 6y79:A (2.96) BS03 FES 1.6.99.3 GO:0003954 ... F2Z6F1 33243981
    1809 6y79:H (2.96) BS01 FES 1.6.99.3 GO:0016491 ... F2Z6C0 33243981
    1810 6y8j:A (2.05) BS01 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1811 6y8s:A (1.629) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1812 6y9c:A (1.8) BS03 FES 1.14.13.239 GO:0005506 ... D0C9N6 36617384
    1813 6y9d:A (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1814 6y9d:B (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1815 6y9d:C (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1816 6y9d:D (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1817 6y9d:E (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1818 6y9d:F (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1819 6y9d:G (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1820 6y9d:H (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1821 6y9d:I (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1822 6y9d:J (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1823 6y9d:K (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1824 6y9d:L (1.97) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1825 6yac:N (2.5) BS01 FES ? GO:0009055 ... P09911 33020607
    1826 6yav:A (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    1827 6yav:B (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    1828 6yav:C (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    1829 6yav:D (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    1830 6yav:E (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    1831 6yez:N (2.7) BS01 FES ? GO:0009055 ... P09911 33020607
    1832 6yf4:A (1.77) BS06 FES 1.12.7.2 GO:0005506 ... P29166 32796105
    1833 6yf4:B (1.77) BS06 FES 1.12.7.2 GO:0005506 ... P29166 32796105
    1834 6yj4:E (2.7) BS01 FES 1.6.99.3 GO:0016491 ... F2Z6C0 32747785
    1835 6yj4:G (2.7) BS03 FES 1.6.99.3 GO:0003954 ... F2Z6F1 32747785
    1836 6ymx:E (3.17) BS01 FES 7.1.1.8 GO:0008121 ... P08067 33016568
    1837 6ymx:P (3.17) BS01 FES 7.1.1.8 GO:0008121 ... P08067 33016568
    1838 6z1p:AV (3.7) BS02 FES ? GO:0005737 ... Q22HE3 32553108
    1839 6z1p:AV (3.7) BS03 FES ? GO:0005737 ... Q22HE3 32553108
    1840 6zfs:E (3.5) BS01 FES 7.1.1.8 GO:0008121 ... P13272 N/A
    1841 6zft:E (3.3) BS01 FES 7.1.1.8 GO:0008121 ... P13272 N/A
    1842 6zfu:E (3.5) BS01 FES 7.1.1.8 GO:0008121 ... P13272 N/A
    1843 6zgp:A (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1844 6zgp:B (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1845 6zgp:C (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1846 6zgp:D (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1847 6zgp:E (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1848 6zgp:F (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1849 6zgp:G (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1850 6zgp:H (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1851 6zgp:I (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1852 6zgp:J (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1853 6zgp:K (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1854 6zgp:L (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    1855 6ziy:2 (4.25) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    1856 6ziy:3 (4.25) BS04 FES 7.1.1.- GO:0003954 ... Q56223 32811817
    1857 6zjl:2 (4.3) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    1858 6zjl:3 (4.3) BS04 FES 7.1.1.- GO:0003954 ... Q56223 32811817
    1859 6zjn:2 (6.1) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    1860 6zjn:3 (6.1) BS04 FES 7.1.1.- GO:0003954 ... Q56223 32811817
    1861 6zjy:2 (5.5) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    1862 6zjy:3 (5.5) BS04 FES 7.1.1.- GO:0003954 ... Q56223 32811817
    1863 6zk9:2 (2.3) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1864 6zk9:3 (2.3) BS03 FES N/A GO:0008137 ... N/A 32972993
    1865 6zkc:2 (3.1) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1866 6zkc:3 (3.1) BS03 FES N/A GO:0008137 ... N/A 32972993
    1867 6zkd:2 (2.7) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1868 6zkd:3 (2.7) BS03 FES N/A GO:0008137 ... N/A 32972993
    1869 6zke:2 (2.6) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1870 6zke:3 (2.6) BS03 FES N/A GO:0008137 ... N/A 32972993
    1871 6zkf:2 (2.8) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1872 6zkf:3 (2.8) BS03 FES N/A GO:0008137 ... N/A 32972993
    1873 6zkg:2 (3.4) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1874 6zkg:3 (3.4) BS03 FES N/A GO:0008137 ... N/A 32972993
    1875 6zkh:2 (3.0) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1876 6zkh:3 (3.0) BS03 FES N/A GO:0008137 ... N/A 32972993
    1877 6zki:2 (2.8) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1878 6zki:3 (2.8) BS03 FES N/A GO:0008137 ... N/A 32972993
    1879 6zkj:2 (3.0) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1880 6zkj:3 (3.0) BS03 FES N/A GO:0008137 ... N/A 32972993
    1881 6zkk:2 (3.7) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1882 6zkk:3 (3.7) BS03 FES N/A GO:0008137 ... N/A 32972993
    1883 6zkl:2 (3.1) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1884 6zkl:3 (3.1) BS03 FES N/A GO:0008137 ... N/A 32972993
    1885 6zkm:2 (2.8) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1886 6zkm:3 (2.8) BS03 FES N/A GO:0008137 ... N/A 32972993
    1887 6zkn:2 (2.9) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1888 6zkn:3 (2.9) BS03 FES N/A GO:0008137 ... N/A 32972993
    1889 6zko:2 (3.8) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1890 6zko:3 (3.8) BS03 FES N/A GO:0008137 ... N/A 32972993
    1891 6zkp:2 (3.2) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1892 6zkp:3 (3.2) BS03 FES N/A GO:0008137 ... N/A 32972993
    1893 6zkq:2 (3.3) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1894 6zkq:3 (3.3) BS03 FES N/A GO:0008137 ... N/A 32972993
    1895 6zkr:2 (3.5) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1896 6zkr:3 (3.5) BS03 FES N/A GO:0008137 ... N/A 32972993
    1897 6zks:2 (3.1) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1898 6zks:3 (3.1) BS03 FES N/A GO:0008137 ... N/A 32972993
    1899 6zkt:2 (2.8) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1900 6zkt:3 (2.8) BS03 FES N/A GO:0008137 ... N/A 32972993
    1901 6zku:2 (3.0) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1902 6zku:3 (3.0) BS03 FES N/A GO:0008137 ... N/A 32972993
    1903 6zkv:2 (2.9) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    1904 6zkv:3 (2.9) BS03 FES N/A GO:0008137 ... N/A 32972993
    1905 6zm5:AP (2.89) BS02 FES ? GO:0003735 ... Q9Y3D5 33602856
    1906 6zm5:AT (2.89) BS02 FES ? GO:0003735 ... P82663 33602856
    1907 6zm5:r (2.89) BS02 FES ? GO:0003735 ... Q9NVS2 33602856
    1908 6zm6:AP (2.59) BS02 FES ? GO:0003735 ... Q9Y3D5 33602856
    1909 6zm6:AT (2.59) BS02 FES ? GO:0003735 ... P82663 33602856
    1910 6zm6:r (2.59) BS02 FES ? GO:0003735 ... Q9NVS2 33602856
    1911 6zr2:E (3.1) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 33067417
    1912 6zr2:G (3.1) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    1913 6ztq:E (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 33067417
    1914 6ztq:G (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    1915 7a23:B (3.7) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33060577
    1916 7a23:C (3.7) BS03 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33060577
    1917 7a24:B (3.8) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33060577
    1918 7a24:C (3.8) BS03 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33060577
    1919 7ak5:E (3.17) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 33514727
    1920 7ak5:G (3.17) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 33514727
    1921 7ak6:E (3.82) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 33514727
    1922 7ak6:G (3.82) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 33514727
    1923 7akt:A (1.11) BS01 FES ? GO:0009055 ... P07839 N/A
    1924 7aoi:A5 (3.5) BS02 FES ? N/A A0A3L6LD92 33576519
    1925 7aqr:E (2.91) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33768254
    1926 7aqr:G (2.91) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    1927 7ar7:E (3.72) BS01 FES 7.1.1.2 GO:0016491 ... O22769 33768254
    1928 7ar7:G (3.72) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    1929 7ar8:E (3.53) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33768254
    1930 7ar8:G (3.53) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    1931 7arb:E (3.41) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33768254
    1932 7arb:G (3.41) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    1933 7arc:E (2.88) BS01 FES N/A GO:0016491 ... N/A 33768254
    1934 7arc:G (2.88) BS02 FES N/A GO:0008137 ... N/A 33768254
    1935 7ard:E (3.11) BS01 FES N/A GO:0016491 ... N/A 33768254
    1936 7ard:G (3.11) BS02 FES N/A GO:0008137 ... N/A 33768254
    1937 7awt:E (2.73) BS01 FES 7.1.1.- GO:0003954 ... P0AFD1 34562374
    1938 7awt:G (2.73) BS01 FES 7.1.1.- GO:0003954 ... P33602 34562374
    1939 7b0n:E (3.7) BS01 FES 1.6.99.3 GO:0016491 ... Q9UUT9 33640456
    1940 7b0n:G (3.7) BS03 FES 1.6.99.3 GO:0003954 ... Q9UUU3 33640456
    1941 7b7q:A (1.35) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1942 7b7q:B (1.35) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1943 7b7t:A (1.38) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1944 7b7t:B (1.38) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1945 7b93:E (3.04) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 33990335
    1946 7b93:G (3.04) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 33990335
    1947 7b95:A (1.4) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1948 7b95:B (1.4) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1949 7b97:A (1.45) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1950 7b97:B (1.45) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1951 7b9a:A (2.5) BS03 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1952 7b9a:B (2.5) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1953 7b9a:C (2.5) BS03 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1954 7b9a:D (2.5) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    1955 7bkb:F (3.5) BS01 FES ? N/A Q2FKZ0 34516836
    1956 7bkb:f (3.5) BS01 FES ? N/A Q2FKZ0 34516836
    1957 7bkc:F (3.0) BS01 FES ? N/A Q2FKZ0 34516836
    1958 7bkc:f (3.0) BS01 FES ? N/A Q2FKZ0 34516836
    1959 7bkd:F (3.0) BS01 FES ? N/A Q2FKZ0 34516836
    1960 7bke:F (2.8) BS01 FES ? N/A Q2FKZ0 34516836
    1961 7bug:A (1.6) BS01 FES ? GO:0046872 ... Q84II6 N/A
    1962 7bug:B (1.6) BS01 FES ? GO:0046872 ... Q84II6 N/A
    1963 7bug:C (1.6) BS01 FES ? GO:0046872 ... Q84II6 N/A
    1964 7buh:A (1.79) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    1965 7bui:A (2.15) BS01 FES ? GO:0046872 ... Q84II6 N/A
    1966 7bui:B (2.15) BS01 FES ? GO:0046872 ... Q84II6 N/A
    1967 7bui:C (2.15) BS01 FES ? GO:0046872 ... Q84II6 N/A
    1968 7bui:D (2.15) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    1969 7bui:E (2.15) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    1970 7c3a:A (2.6) BS02 FES ? GO:0000166 ... Q84II0 34196618
    1971 7c3a:B (2.6) BS02 FES ? GO:0000166 ... Q84II0 34196618
    1972 7c3a:C (2.6) BS02 FES ? GO:0000166 ... Q84II0 34196618
    1973 7c3b:A (2.4) BS01 FES ? GO:0000166 ... Q84II0 34196618
    1974 7c3b:B (2.4) BS01 FES ? GO:0000166 ... Q84II0 34196618
    1975 7c3b:C (2.4) BS01 FES ? GO:0000166 ... Q84II0 34196618
    1976 7c8m:A (3.5) BS01 FES ? GO:0005506 ... A0B757 33938220
    1977 7c8m:C (3.5) BS01 FES ? GO:0005506 ... A0B757 33938220
    1978 7c8n:A (1.5) BS01 FES ? GO:0005506 ... A0B757 33938220
    1979 7c8o:B (1.84) BS01 FES ? GO:0005506 ... A0B757 N/A
    1980 7c8o:D (1.84) BS01 FES ? GO:0005506 ... A0B757 N/A
    1981 7c8z:A (2.6) BS01 FES 1.14.13.172 GO:0004497 ... O52379 33452034
    1982 7c8z:C (2.6) BS01 FES 1.14.13.172 GO:0004497 ... O52379 33452034
    1983 7c8z:E (2.6) BS01 FES 1.14.13.172 GO:0004497 ... O52379 33452034
    1984 7c8z:G (2.6) BS01 FES 1.14.13.172 GO:0004497 ... O52379 33452034
    1985 7cnp:A (1.6) BS01 FES N/A N/A N/A 34099860
    1986 7cnp:B (1.6) BS01 FES N/A N/A N/A 34099860
    1987 7cnp:C (1.6) BS01 FES N/A N/A N/A 34099860
    1988 7cnq:A (2.0) BS01 FES N/A N/A N/A 34099860
    1989 7cnq:B (2.0) BS01 FES N/A N/A N/A 34099860
    1990 7cnq:C (2.0) BS01 FES N/A N/A N/A 34099860
    1991 7cnq:D (2.0) BS01 FES N/A N/A N/A 34099860
    1992 7cnv:A (2.23) BS01 FES ? GO:0005506 ... A0B757 N/A
    1993 7cnv:B (2.23) BS01 FES ? GO:0005506 ... A0B757 N/A
    1994 7cnv:C (2.23) BS01 FES ? GO:0005506 ... A0B757 N/A
    1995 7cnv:D (2.23) BS01 FES ? GO:0005506 ... A0B757 N/A
    1996 7cnv:E (2.23) BS01 FES ? GO:0005506 ... A0B757 N/A
    1997 7cnv:F (2.23) BS01 FES ? GO:0005506 ... A0B757 N/A
    1998 7ct7:A (2.0) BS01 FES 4.98.1.1 GO:0004325 ... P22830 N/A
    1999 7ct7:B (2.0) BS01 FES 4.98.1.1 GO:0004325 ... P22830 N/A
    2000 7ctc:A (2.0) BS01 FES 4.98.1.1 GO:0004325 ... P22830 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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