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BioLiP
Download all results in tab-seperated text for 3066 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a70:A (1.7) BS01 FES ? GO:0009055 ... P00221 10089511
    2 1awd:A (1.4) BS01 FES ? GO:0009055 ... P56408 10545324
    3 1ayf:A (1.85) BS01 FES ? GO:0051536 ... P00257 9551550
    4 1ayf:B (1.85) BS01 FES ? GO:0051536 ... P00257 9551550
    5 1b9r:A (-1.00) BS01 FES ? GO:0005829 ... P33007 10220356
    6 1bcc:E (3.16) BS01 FES 7.1.1.8 GO:0008121 ... P13272 9565029
    7 1be3:E (3.0) BS01 FES 7.1.1.8 GO:0008121 ... P13272 9651245
    8 1bgy:Q (3.0) BS01 FES 7.1.1.8 GO:0008121 ... P13272 9651245
    9 1c4a:A (2.4) BS06 FES 1.12.7.2 GO:0005506 ... P29166 10529166
    10 1c4c:A (2.4) BS06 FES 1.12.7.2 GO:0005506 ... P29166 10529166
    11 1cje:A (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    12 1cje:B (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    13 1cje:C (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    14 1cje:D (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    15 1czp:A (1.17) BS01 FES ? GO:0005515 ... P0A3C8 10625442
    16 1czp:B (1.17) BS01 FES ? GO:0005515 ... P0A3C8 10625442
    17 1dgj:A (2.8) BS01 FES 1.2.-.- GO:0005506 ... Q9REC4 10704312
    18 1dgj:A (2.8) BS02 FES 1.2.-.- GO:0005506 ... Q9REC4 10704312
    19 1doi:A (1.9) BS01 FES ? GO:0046872 ... P00217 8612076
    20 1dox:A (-1.00) BS01 FES ? GO:0005515 ... P27320 7578051
    21 1doy:A (-1.00) BS01 FES ? GO:0005515 ... P27320 7578051
    22 1e0z:A (-1.00) BS01 FES ? GO:0046872 ... P00216 15628843
    23 1e10:A (-1.00) BS01 FES ? GO:0046872 ... P00216 15628843
    24 1e6e:B (2.3) BS01 FES ? GO:0051536 ... P00257 11053423
    25 1e6e:D (2.3) BS01 FES ? GO:0051536 ... P00257 11053423
    26 1e7p:B (3.1) BS01 FES 1.3.5.1 GO:0005886 ... P17596 11248702
    27 1e7p:E (3.1) BS01 FES 1.3.5.1 GO:0005886 ... P17596 11248702
    28 1e7p:H (3.1) BS01 FES 1.3.5.1 GO:0005886 ... P17596 11248702
    29 1e7p:K (3.1) BS01 FES 1.3.5.1 GO:0005886 ... P17596 11248702
    30 1e9m:A (2.07) BS01 FES ? GO:0046872 ... P80306 11173487
    31 1eg9:A (1.6) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 10669618
    32 1ep1:B (2.2) BS02 FES 1.3.3.1 GO:0005515 ... P56968 11188687
    33 1ep2:B (2.4) BS02 FES 1.3.3.1 GO:0005515 ... P56968 11188687
    34 1ep3:B (2.1) BS02 FES 1.3.3.1 GO:0005515 ... P56968 11188687
    35 1ewy:C (2.38) BS02 FES ? GO:0005515 ... P0A3C8 11053838
    36 1ezv:E (2.3) BS01 FES 7.1.1.8 GO:0008121 ... P08067 10873857
    37 1f37:A (2.3) BS01 FES ? GO:0046872 ... O66511 10884354
    38 1f37:B (2.3) BS01 FES ? GO:0046872 ... O66511 10884354
    39 1feh:A (1.8) BS06 FES 1.12.7.2 GO:0005506 ... P29166 9836629
    40 1ffu:A (2.35) BS01 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    41 1ffu:A (2.35) BS02 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    42 1ffu:D (2.35) BS01 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    43 1ffu:D (2.35) BS02 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    44 1ffv:A (2.25) BS01 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    45 1ffv:A (2.25) BS02 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    46 1ffv:D (2.25) BS01 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    47 1ffv:D (2.25) BS02 FES 1.2.5.3 GO:0008805 ... P19915 10966817
    48 1fiq:A (2.5) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 11005854
    49 1fiq:A (2.5) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 11005854
    50 1fo4:A (2.1) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 11005854
    51 1fo4:A (2.1) BS03 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 11005854
    52 1fo4:B (2.1) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 11005854
    53 1fo4:B (2.1) BS03 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 11005854
    54 1fqt:A (1.6) BS01 FES 1.14.12.- GO:0009056 ... P37332 11188691
    55 1fqt:B (1.6) BS01 FES 1.14.12.- GO:0009056 ... P37332 11188691
    56 1frd:A (1.7) BS01 FES ? GO:0009055 ... P11053 8329401
    57 1frr:A (1.8) BS01 FES ? GO:0009055 ... P00235 15299454
    58 1frr:B (1.8) BS01 FES ? GO:0009055 ... P00235 15299454
    59 1fxa:A (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    60 1fxa:B (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    61 1fxi:A (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    62 1fxi:B (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    63 1fxi:C (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    64 1fxi:D (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    65 1g8j:B (2.03) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    66 1g8j:D (2.03) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    67 1g8k:B (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    68 1g8k:D (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    69 1g8k:F (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    70 1g8k:H (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    71 1gaq:B (2.59) BS01 FES ? GO:0009055 ... P27787 11175898
    72 1hrk:A (2.0) BS01 FES 4.98.1.1 GO:0004325 ... P22830 11175906
    73 1hrk:B (2.0) BS01 FES 4.98.1.1 GO:0004325 ... P22830 11175906
    74 1i7h:A (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    75 1i7h:B (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    76 1i7h:C (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    77 1iue:A (1.7) BS01 FES ? GO:0009055 ... Q8IED5 N/A
    78 1iue:B (1.7) BS01 FES ? GO:0009055 ... Q8IED5 N/A
    79 1j7a:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    80 1j7b:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    81 1j7c:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    82 1jm1:A (1.11) BS01 FES ? GO:0016020 ... Q53766 12054871
    83 1jq4:A (-1.00) BS01 FES 1.14.13.25 GO:0051536 ... P22868 11772001
    84 1jro:A (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    85 1jro:A (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    86 1jro:C (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    87 1jro:C (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    88 1jro:E (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    89 1jro:E (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    90 1jro:G (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    91 1jro:G (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    92 1jrp:A (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    93 1jrp:A (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    94 1jrp:C (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    95 1jrp:C (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    96 1jrp:E (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    97 1jrp:E (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    98 1jrp:G (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    99 1jrp:G (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    100 1kb9:E (2.3) BS02 FES 7.1.1.8 GO:0008121 ... P08067 11726495
    101 1kf6:B (2.7) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    102 1kf6:N (2.7) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    103 1kfy:B (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    104 1kfy:N (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    105 1krh:A (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    106 1krh:B (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    107 1kyo:E (2.97) BS01 FES 7.1.1.8 GO:0008121 ... P08067 11880631
    108 1kyo:P (2.97) BS01 FES 7.1.1.8 GO:0008121 ... P08067 11880631
    109 1l0l:E (2.35) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12269811
    110 1l0n:E (2.6) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12269811
    111 1l0v:B (3.3) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    112 1l0v:N (3.3) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    113 1l5p:A (2.2) BS01 FES ? GO:0051536 ... P21149 12051855
    114 1l5p:B (2.2) BS01 FES ? GO:0051536 ... P21149 12051855
    115 1l5p:C (2.2) BS01 FES ? GO:0051536 ... P21149 12051855
    116 1l6u:A (-1.00) BS01 FES ? GO:0051536 ... P00257 12069587
    117 1l6v:A (-1.00) BS01 FES ? GO:0051536 ... P00257 12069587
    118 1m2a:A (1.5) BS01 FES ? GO:0046872 ... O66511 12089152
    119 1m2a:B (1.5) BS01 FES ? GO:0046872 ... O66511 12089152
    120 1m2b:A (1.25) BS01 FES ? GO:0046872 ... O66511 12089152
    121 1m2b:B (1.25) BS01 FES ? GO:0046872 ... O66511 12089152
    122 1m2d:A (1.05) BS01 FES ? GO:0046872 ... O66511 12089152
    123 1m2d:B (1.05) BS01 FES ? GO:0046872 ... O66511 12089152
    124 1n5w:A (1.5) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    125 1n5w:A (1.5) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    126 1n5w:D (1.5) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    127 1n5w:D (1.5) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    128 1n5x:A (2.8) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 12421831
    129 1n5x:A (2.8) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 12421831
    130 1n5x:B (2.8) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 12421831
    131 1n5x:B (2.8) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 12421831
    132 1n60:A (1.19) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    133 1n60:A (1.19) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    134 1n60:D (1.19) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    135 1n60:D (1.19) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    136 1n61:A (1.3) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    137 1n61:A (1.3) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    138 1n61:D (1.3) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    139 1n61:D (1.3) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    140 1n62:A (1.09) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    141 1n62:A (1.09) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    142 1n62:D (1.09) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    143 1n62:D (1.09) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    144 1n63:A (1.21) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    145 1n63:A (1.21) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    146 1n63:D (1.21) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    147 1n63:D (1.21) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    148 1ndo:A (2.25) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 9634695
    149 1ndo:C (2.25) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 9634695
    150 1ndo:E (2.25) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 9634695
    151 1nek:B (2.6) BS02 FES 1.3.5.1 GO:0005515 ... P07014 12560550
    152 1nen:B (2.9) BS02 FES 1.3.5.1 GO:0005515 ... P07014 12560550
    153 1ntk:E (2.6) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12885240
    154 1ntm:E (2.4) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12885240
    155 1ntz:E (2.6) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12885240
    156 1nu1:E (3.2) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12885240
    157 1nyk:A (1.31) BS01 FES ? GO:0016020 ... Q5SGZ9 12809486
    158 1nyk:B (1.31) BS01 FES ? GO:0016020 ... Q5SGZ9 12809486
    159 1o7g:A (1.7) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    160 1o7h:A (2.2) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    161 1o7m:A (1.75) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    162 1o7n:A (1.4) BS03 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    163 1o7p:A (1.95) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    164 1o7w:A (1.9) BS01 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    165 1off:A (1.8) BS01 FES ? GO:0005515 ... P27320 12818206
    166 1ohv:A (2.3) BS02 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    167 1ohv:B (2.3) BS01 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    168 1ohv:C (2.3) BS02 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    169 1ohv:D (2.3) BS01 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    170 1ohw:A (2.3) BS03 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    171 1ohw:B (2.3) BS02 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    172 1ohw:C (2.3) BS03 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    173 1ohw:D (2.3) BS02 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    174 1ohy:A (2.8) BS03 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    175 1ohy:B (2.8) BS02 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    176 1ohy:C (2.8) BS03 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    177 1ohy:D (2.8) BS02 FES 2.6.1.19
    2.6.1.22    		 GO:0003867 ... P80147 14534310
    178 1oqq:A (1.47) BS01 FES ? GO:0005515 ... P00259 14529624
    179 1oqq:B (1.47) BS01 FES ? GO:0005515 ... P00259 14529624
    180 1oqr:A (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    181 1oqr:B (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    182 1oqr:C (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    183 1p84:E (2.5) BS01 FES 7.1.1.8 GO:0008121 ... P08067 12782631
    184 1pdx:A (-1.00) BS01 FES ? GO:0005515 ... P00259 10200155
    185 1pfd:A (-1.00) BS01 FES 1.7.7.2 GO:0006124 ... Q7M1S1 9874213
    186 1pp9:E (2.1) BS01 FES 7.1.1.8 GO:0008121 ... P13272 16024040
    187 1pp9:R (2.1) BS02 FES 7.1.1.8 GO:0008121 ... P13272 16024040
    188 1ppj:E (2.1) BS01 FES 7.1.1.8 GO:0008121 ... P13272 16024040
    189 1ppj:R (2.1) BS02 FES 7.1.1.8 GO:0008121 ... P13272 16024040
    190 1put:A (-1.00) BS01 FES ? GO:0005515 ... P00259 8204575
    191 1q90:C (3.1) BS01 FES 7.1.1.6 GO:0016020 ... P49728 14647374
    192 1qlb:B (2.33) BS01 FES 1.3.5.1 GO:0005886 ... P17596 10586875
    193 1qlb:E (2.33) BS01 FES 1.3.5.1 GO:0005886 ... P17596 10586875
    194 1qoa:A (1.7) BS01 FES ? GO:0009055 ... P0A3C7 9398238
    195 1qoa:B (1.7) BS01 FES ? GO:0009055 ... P0A3C7 9398238
    196 1qob:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    197 1qob:B (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    198 1qof:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    199 1qof:B (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    200 1qog:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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