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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gkl:A (1.4) BS01 FER 3.2.1.8 N/A P51584 11738044
    2 1gkl:B (1.4) BS01 FER 3.2.1.8 N/A P51584 11738044
    3 1gw2:A (2.15) BS04 FER 1.11.1.7 GO:0004601 ... P00433 N/A
    4 1gw2:A (2.15) BS05 FER 1.11.1.7 GO:0004601 ... P00433 N/A
    5 1jt2:A (1.8) BS01 FER 3.2.1.8 N/A P10478 11601976
    6 1kyz:A (2.2) BS01 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    7 1kyz:C (2.2) BS01 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    8 1kyz:E (2.2) BS02 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    9 1uwc:A (1.08) BS01 FER 3.1.1.73 GO:0005576 ... O42807 15103133
    10 1uwc:A (1.08) BS02 FER 3.1.1.73 GO:0005576 ... O42807 15103133
    11 1uwc:B (1.08) BS01 FER 3.1.1.73 GO:0005576 ... O42807 15103133
    12 2bjh:A (2.54) BS01 FER 3.1.1.73 GO:0005576 ... O42807 16128806
    13 2bjh:B (2.54) BS01 FER 3.1.1.73 GO:0005576 ... O42807 16128806
    14 2bjh:C (2.54) BS01 FER 3.1.1.73 GO:0005576 ... O42807 16128806
    15 2wtn:A (2.1) BS01 FER ? N/A D2YW37 20058325
    16 2wtn:B (2.1) BS01 FER ? N/A D2YW37 20058325
    17 3cbg:A (2.0) BS03 FER 2.1.1.- GO:0008168 ... Q55813 18502765
    18 3nx2:A (2.01) BS01 FER 4.1.1.- GO:0016831 ... C6F3U5 21283705
    19 3pfc:A (1.75) BS01 FER 3.1.1.- GO:0016787 ... D3YEX6 21876742
    20 4jb0:A (1.91) BS01 FER ? N/A Q6N8W4 23555803
    21 4pme:B (1.264) BS01 FER ? GO:0005179 ... P02766 25224922
    22 4pme:B (1.264) BS02 FER ? GO:0005179 ... P02766 25224922
    23 4rgu:A (1.891) BS01 FER ? GO:0003700 ... Q7X0D9 N/A
    24 4rgu:A (1.891) BS02 FER ? GO:0003700 ... Q7X0D9 N/A
    25 4rgu:B (1.891) BS01 FER ? GO:0003700 ... Q7X0D9 N/A
    26 4rgu:B (1.891) BS02 FER ? GO:0003700 ... Q7X0D9 N/A
    27 5cxx:A (1.55) BS01 FER 3.1.1.73 GO:0016787 ... F2YCB6 27026397
    28 5cxx:B (1.55) BS01 FER 3.1.1.73 GO:0016787 ... F2YCB6 27026397
    29 5cxx:C (1.55) BS01 FER 3.1.1.73 GO:0016787 ... F2YCB6 27026397
    30 5x14:A (1.68) BS01 FER ? N/A E0TW95 29136175
    31 6atj:A (2.0) BS04 FER 1.11.1.7 GO:0004601 ... P00433 10574977
    32 6hop:A (1.55) BS01 FER 2.7.11.1 GO:0004672 ... P68400 31661600 PDBbind: -logKd/Ki=5.62, IC50=2.38uM
    33 6hoq:A (1.55) BS01 FER 2.7.11.1 GO:0004672 ... P68400 31661600 PDBbind: -logKd/Ki=6.39, Ki=0.41uM
    34 6hov:A (1.85) BS01 FER ? N/A O60885 31661600 PDBbind: -logKd/Ki=3.30, Kd>500uM
    35 6mby:A (1.496) BS02 FER 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30839290 BindingDB: Ki=2400nM, IC50=6440nM
    36 6yux:A (1.36) BS02 FER N/A GO:0016491 ... N/A 33412202
    37 7atj:A (1.47) BS05 FER 1.11.1.7 GO:0004601 ... P00433 10574977
    38 7atj:A (1.47) BS06 FER 1.11.1.7 GO:0004601 ... P00433 10574977
    39 7ntd:AAA (1.75) BS01 FER ? GO:0046872 ... Q1R0W5 34375507
    40 7ntd:BBB (1.75) BS01 FER ? GO:0046872 ... Q1R0W5 34375507
    41 7z2u:A (1.9) BS01 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    42 7z2u:A (1.9) BS02 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    43 7z2u:B (1.9) BS01 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    44 7z2u:B (1.9) BS02 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    45 8iyb:A (1.5) BS01 FER 3.1.1.-
    3.1.1.72    		 GO:0000272 ... A0A1L9T9J3 37783244
    46 8iyb:B (1.5) BS01 FER 3.1.1.-
    3.1.1.72    		 GO:0000272 ... A0A1L9T9J3 37783244
    47 8jh9:A (2.0) BS01 FER N/A GO:0030600 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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