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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1nf4:A (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    2 1nf4:B (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    3 1nf4:C (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    4 1nf4:D (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    5 1nf4:E (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    6 1nf4:F (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    7 1nf4:G (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    8 1nf4:H (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    9 1nf4:I (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10 1nf4:J (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    11 1nf4:K (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    12 1nf4:L (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    13 1nf4:M (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    14 1nf4:N (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    15 1nf4:O (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    16 1nf4:P (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    17 1nf6:A (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    18 1nf6:B (2.35) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    19 1nf6:C (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    20 1nf6:D (2.35) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    21 1nf6:E (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    22 1nf6:F (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    23 1nf6:G (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    24 1nf6:H (2.35) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    25 1nf6:I (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    26 1nf6:J (2.35) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    27 1nf6:K (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    28 1nf6:L (2.35) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    29 1nf6:M (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    30 1nf6:N (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    31 1nf6:O (2.35) BS02 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    32 1nf6:P (2.35) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    33 1nfv:A (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    34 1nfv:B (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    35 1nfv:C (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    36 1nfv:D (1.95) BS04 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    37 1nfv:E (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    38 1nfv:F (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    39 1nfv:G (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    40 1nfv:H (1.95) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    41 1nfv:I (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    42 1nfv:J (1.95) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    43 1nfv:K (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    44 1nfv:L (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    45 1nfv:M (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    46 1nfv:N (1.95) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    47 1nfv:O (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    48 1nfv:P (1.95) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    49 5loq:A (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 27758026
    50 5loq:B (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 27758026
    51 5loq:C (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 27758026
    52 5loq:D (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 27758026
    53 5loq:E (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 27758026
    54 6fxj:A (1.79) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    55 6fxj:B (1.79) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    56 6fxj:C (1.79) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    57 6fxj:D (1.79) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    58 6fxj:E (1.79) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    59 6fxq:A (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    60 6fxq:B (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    61 6fxq:C (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    62 6fxq:D (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    63 6fxq:E (1.69) BS01 FEC 1.3.98.5 GO:0004601 ... Q8Y5F1 31423350
    64 6sv3:A (1.64001) BS01 FEC 4.99.1.9 GO:0004325 ... Q8Y565 31794133
    65 6xuc:A (1.8702) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 32440366
    66 6xuc:B (1.8702) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 32440366
    67 6xuc:C (1.8702) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 32440366
    68 6xuc:D (1.8702) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 32440366
    69 6xuc:E (1.8702) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 32440366
    70 7q4f:A (2.15) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    71 7q4f:B (2.15) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    72 7q4f:C (2.15) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    73 7q4f:D (2.15) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    74 7q4f:E (2.15) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    75 7q4g:A (1.82) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    76 7q4g:B (1.82) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    77 7q4g:C (1.82) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    78 7q4g:D (1.82) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    79 7q4g:E (1.82) BS01 FEC 1.3.98.5 GO:0006783 ... Q6NGV6 35141216
    80 9f0g:A (1.85) BS01 FEC 4.99.1.9 GO:0004325 ... Q8Y565 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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