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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 3797 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 2fl0:D (2.7) BS04 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    402 2fl0:E (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    403 2fl0:E (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    404 2fl0:F (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    405 2fl0:F (2.7) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    406 2fl0:F (2.7) BS04 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    407 2fl0:G (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    408 2fl0:G (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    409 2fl0:H (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    410 2fl0:H (2.7) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 16584178
    411 2fnq:A (3.2) BS01 FE2 1.13.11.40
    4.2.1.-    		 GO:0005506 ... O16025 16162493
    412 2fnq:B (3.2) BS01 FE2 1.13.11.40
    4.2.1.-    		 GO:0005506 ... O16025 16162493
    413 2g19:A (1.7) BS01 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 16782814
    414 2g1m:A (2.2) BS01 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 16782814
    415 2gcu:A (1.477) BS01 FE2 1.13.11.18 GO:0006749 ... Q9C8L4 16929096
    416 2gcu:B (1.477) BS01 FE2 1.13.11.18 GO:0006749 ... Q9C8L4 16929096
    417 2gcu:C (1.477) BS01 FE2 1.13.11.18 GO:0006749 ... Q9C8L4 16929096
    418 2gcu:D (1.477) BS01 FE2 1.13.11.18 GO:0006749 ... Q9C8L4 16929096
    419 2gmr:L (2.5) BS06 FE2 ? GO:0009772 ... P0C0Y8 17105193
    420 2gmr:M (2.5) BS04 FE2 ? GO:0009772 ... P0C0Y9 17105193
    421 2gnu:L (2.2) BS04 FE2 ? GO:0009772 ... P0C0Y8 17005199
    422 2gnu:M (2.2) BS02 FE2 ? GO:0009772 ... P0C0Y9 17005199
    423 2goj:A (2.0) BS01 FE2 1.15.1.1 GO:0004784 ... Q27740 19384994
    424 2goj:B (2.0) BS01 FE2 1.15.1.1 GO:0004784 ... Q27740 19384994
    425 2gp3:A (2.35) BS02 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 16677698
    426 2gp3:B (2.35) BS02 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 16677698
    427 2gp5:A (2.28) BS02 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 16677698
    428 2gp5:B (2.28) BS02 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 16677698
    429 2gpc:A (1.9) BS01 FE2 1.15.1.1 GO:0004784 ... Q4DI29 19384994
    430 2gpc:B (1.9) BS01 FE2 1.15.1.1 GO:0004784 ... Q4DI29 19384994
    431 2hbt:A (1.6) BS01 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 N/A
    432 2hbu:A (1.85) BS01 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 N/A
    433 2hji:A (-1.00) BS01 FE2 1.13.11.53
    1.13.11.54    		 GO:0005506 ... Q9ZFE7 16989860
    434 2i5n:L (1.96) BS01 FE2 ? GO:0009772 ... P06009 17159147
    435 2i5n:M (1.96) BS01 FE2 ? GO:0009772 ... P06010 17159147
    436 2ic1:A (2.7) BS01 FE2 1.13.11.20 GO:0000097 ... Q16878 17135237
    437 2ig9:A (1.9) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    438 2ig9:B (1.9) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    439 2ig9:C (1.9) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    440 2ig9:D (1.9) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    441 2iga:A (1.95) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    442 2iga:B (1.95) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    443 2iga:C (1.95) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    444 2iga:D (1.95) BS01 FE2 1.13.11.15 GO:0046872 ... Q45135 17446402
    445 2ilm:A (2.3) BS02 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 18611856
    446 2ivi:B (1.3) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 17397141
    447 2ivj:A (1.46) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 17397141
    448 2ivp:A (2.5) BS01 FE2 2.3.1.234 GO:0000049 ... Q9UXT7 17766251
    449 2ji1:A (1.7) BS02 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    450 2ji1:B (1.7) BS02 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    451 2ji1:C (1.7) BS03 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    452 2ji1:D (1.7) BS02 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    453 2ji2:A (1.7) BS02 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    454 2ji2:B (1.7) BS02 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    455 2ji2:C (1.7) BS03 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    456 2ji2:D (1.7) BS02 FE2 1.15.1.2 GO:0005506 ... Q46495 17446401
    457 2nyb:A (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    458 2nyb:B (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    459 2nyb:C (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    460 2nyb:D (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    461 2og6:A (1.916) BS01 FE2 1.14.11.39 GO:0005506 ... Q9Z4Z5 17373765
    462 2og7:A (1.66) BS01 FE2 1.14.11.39 GO:0005506 ... Q9Z4Z5 17373765
    463 2p0m:A (2.4) BS01 FE2 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33    		 GO:0001503 ... P12530 17847087
    464 2p0m:B (2.4) BS01 FE2 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33    		 GO:0001503 ... P12530 17847087
    465 2p5b:A (1.99) BS03 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 17567753
    466 2p5b:B (1.99) BS04 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 17567753
    467 2prc:L (2.45) BS05 FE2 ? GO:0009772 ... P06009 9351808
    468 2prc:M (2.45) BS03 FE2 ? GO:0009772 ... P06010 9351808
    469 2pt2:A (2.0) BS01 FE2 ? GO:0005886 ... P72827 17626019
    470 2pxj:A (2.0) BS03 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 17567753
    471 2pxj:B (2.0) BS03 FE2 1.14.11.66
    1.14.11.69    		 N/A O75164 17567753
    472 2qh1:A (2.0) BS01 FE2 ? GO:0046872 ... Q9HLD9 18021800
    473 2qh1:B (2.0) BS01 FE2 ? GO:0046872 ... Q9HLD9 18021800
    474 2r1k:A (2.1) BS01 FE2 3.1.8.1 GO:0008270 ... Q93LD7 18082180
    475 2r1l:A (1.95) BS01 FE2 3.1.8.1 GO:0008270 ... Q93LD7 18082180
    476 2r1m:A (2.5) BS01 FE2 3.1.8.1 GO:0008270 ... Q93LD7 18082180
    477 2r1n:A (1.7) BS01 FE2 3.1.8.1 GO:0008270 ... Q93LD7 18082180
    478 2r1p:A (1.8) BS01 FE2 3.1.8.1 GO:0008270 ... Q93LD7 18082180
    479 2r6s:A (2.1) BS01 FE2 N/A GO:0005506 ... N/A 18391407
    480 2vau:A (1.8) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 18620394
    481 2vbb:A (1.4) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 18620394
    482 2vbd:A (2.0) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 20024142
    483 2vbp:A (1.5) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 20603104
    484 2vc5:A (2.6) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    485 2vc5:B (2.6) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    486 2vc5:C (2.6) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    487 2vc5:D (2.6) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    488 2vc7:A (2.05) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    489 2vc7:B (2.05) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    490 2vc7:C (2.05) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    491 2vc7:D (2.05) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 18486146
    492 2vcm:A (1.65) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 19598184
    493 2ve1:A (2.2) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 19598184
    494 2vw8:A (1.45) BS01 FE2 3.1.2.32 GO:0016787 ... P20581 20419351
    495 2vw8:A (1.45) BS02 FE2 3.1.2.32 GO:0016787 ... P20581 20419351
    496 2w0x:A (2.12) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 20822901
    497 2wa3:A (2.5) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 20822901
    498 2wa4:A (2.5) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 20822901
    499 2wbo:A (1.3) BS02 FE2 1.14.11.41 GO:0005506 ... Q6WZB0 19490124
    500 2wbp:A (1.16) BS02 FE2 1.14.11.41 GO:0005506 ... Q6WZB0 19490124
    501 2wjm:L (1.95) BS06 FE2 ? GO:0009772 ... P06009 19743880
    502 2wjm:M (1.95) BS03 FE2 ? GO:0009772 ... P06010 19743880
    503 2wjn:L (1.86) BS06 FE2 ? GO:0009772 ... P06009 19743880
    504 2wjn:M (1.86) BS03 FE2 ? GO:0009772 ... P06010 19743880
    505 2wo7:A (2.5) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 20603104
    506 2wpn:B (2.04) BS02 FE2 1.12.7.2 GO:0005515 ... Q72AS3 20026074
    507 2x5u:L (3.0) BS06 FE2 ? GO:0009772 ... P06009 20431017
    508 2x5u:M (3.0) BS06 FE2 ? GO:0009772 ... P06010 20431017
    509 2x5v:L (3.0) BS05 FE2 ? GO:0009772 ... P06009 20431017
    510 2x5v:M (3.0) BS06 FE2 ? GO:0009772 ... P06010 20431017
    511 2xgf:A (2.2) BS01 FE2 ? GO:0005198 ... P03744 21041684
    512 2xgf:A (2.2) BS02 FE2 ? GO:0005198 ... P03744 21041684
    513 2xgf:A (2.2) BS03 FE2 ? GO:0005198 ... P03744 21041684
    514 2xgf:A (2.2) BS04 FE2 ? GO:0005198 ... P03744 21041684
    515 2xgf:A (2.2) BS05 FE2 ? GO:0005198 ... P03744 21041684
    516 2xgf:A (2.2) BS06 FE2 ? GO:0005198 ... P03744 21041684
    517 2xgf:A (2.2) BS07 FE2 ? GO:0005198 ... P03744 21041684
    518 2xgf:B (2.2) BS01 FE2 ? GO:0005198 ... P03744 21041684
    519 2xgf:B (2.2) BS02 FE2 ? GO:0005198 ... P03744 21041684
    520 2xgf:B (2.2) BS03 FE2 ? GO:0005198 ... P03744 21041684
    521 2xgf:B (2.2) BS04 FE2 ? GO:0005198 ... P03744 21041684
    522 2xgf:B (2.2) BS05 FE2 ? GO:0005198 ... P03744 21041684
    523 2xgf:B (2.2) BS06 FE2 ? GO:0005198 ... P03744 21041684
    524 2xgf:B (2.2) BS07 FE2 ? GO:0005198 ... P03744 21041684
    525 2xgf:C (2.2) BS01 FE2 ? GO:0005198 ... P03744 21041684
    526 2xgf:C (2.2) BS02 FE2 ? GO:0005198 ... P03744 21041684
    527 2xgf:C (2.2) BS03 FE2 ? GO:0005198 ... P03744 21041684
    528 2xgf:C (2.2) BS04 FE2 ? GO:0005198 ... P03744 21041684
    529 2xgf:C (2.2) BS05 FE2 ? GO:0005198 ... P03744 21041684
    530 2xgf:C (2.2) BS06 FE2 ? GO:0005198 ... P03744 21041684
    531 2xgf:C (2.2) BS07 FE2 ? GO:0005198 ... P03744 21041684
    532 2xr8:A (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    533 2xr8:C (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    534 2xr8:E (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    535 2xr8:G (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    536 2xr8:I (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    537 2xr8:K (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    538 2xr8:M (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    539 2xr8:O (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    540 2xr8:Q (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    541 2xr8:S (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    542 2xr8:U (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    543 2xr8:W (2.49) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    544 2xrx:A (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    545 2xrx:C (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    546 2xrx:E (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    547 2xrx:G (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    548 2xrx:I (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    549 2xrx:K (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    550 2xrx:M (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    551 2xrx:O (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    552 2xrx:Q (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    553 2xrx:S (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    554 2xrx:U (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    555 2xrx:W (2.42) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    556 2xsh:A (2.29) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    557 2xsh:C (2.29) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    558 2xsh:E (2.29) BS03 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    559 2xsh:G (2.29) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    560 2xsh:I (2.29) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    561 2xsh:K (2.29) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    562 2xso:A (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    563 2xso:C (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    564 2xso:E (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    565 2xso:G (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    566 2xso:I (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    567 2xso:K (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    568 2xso:M (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    569 2xso:O (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    570 2xso:Q (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    571 2xso:S (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    572 2xso:U (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    573 2xso:W (2.2) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21073881
    574 2y0i:A (2.28) BS02 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 21251231
    575 2y34:A (2.01) BS01 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 21601578
    576 2yc0:A (2.15) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 21460794
    577 2yfi:A (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    578 2yfi:C (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    579 2yfi:E (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    580 2yfi:G (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    581 2yfi:I (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    582 2yfi:K (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    583 2yfj:A (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    584 2yfj:C (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    585 2yfj:E (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    586 2yfj:G (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    587 2yfj:I (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    588 2yfj:K (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    589 2yfl:A (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    590 2yfl:C (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    591 2yfl:E (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    592 2yfl:G (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    593 2yfl:I (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    594 2yfl:K (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    595 2yu1:A (2.7) BS01 FE2 1.14.11.27 N/A Q9Y2K7 N/A
    596 2yu2:A (2.7) BS01 FE2 1.14.11.27 N/A Q9Y2K7 N/A
    597 2z90:A (2.4) BS01 FE2 ? GO:0003677 ... A0QXB7 18061613
    598 2z90:B (2.4) BS01 FE2 ? GO:0003677 ... A0QXB7 18061613
    599 2z90:C (2.4) BS01 FE2 ? GO:0003677 ... A0QXB7 18061613
    600 2z90:D (2.4) BS01 FE2 ? GO:0003677 ... A0QXB7 18061613
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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