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BioLiP
Download all results in tab-seperated text for 3797 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1afr:A (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2 1afr:A (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    3 1afr:B (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    4 1afr:B (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    5 1afr:C (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    6 1afr:C (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    7 1afr:D (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    8 1afr:D (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    9 1afr:E (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    10 1afr:E (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    11 1afr:F (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    12 1afr:F (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    13 1aig:L (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    14 1aig:M (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    15 1aig:N (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    16 1aig:O (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    17 1aij:L (2.2) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    18 1aij:M (2.2) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    19 1aij:R (2.2) BS05 FE2 ? GO:0009772 ... P0C0Y8 9115209
    20 1aij:S (2.2) BS03 FE2 ? GO:0009772 ... P0C0Y9 9115209
    21 1biq:A (2.05) BS01 FE2 1.17.4.1 GO:0004748 ... P69924 9692970
    22 1biq:B (2.05) BS01 FE2 1.17.4.1 GO:0004748 ... P69924 9692970
    23 1biq:B (2.05) BS02 FE2 1.17.4.1 GO:0004748 ... P69924 9692970
    24 1cc1:L (2.15) BS03 FE2 1.12.99.6 GO:0008901 ... P13065 10378275
    25 1cjx:A (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    26 1cjx:B (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    27 1cjx:C (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    28 1cjx:D (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    29 1cjx:D (2.4) BS02 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    30 1dqk:A (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    31 1dqk:B (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    32 1dqk:C (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    33 1dqk:D (2.0) BS01 FE2 1.15.1.2 GO:0005506 ... P82385 10704199
    34 1drt:A (2.1) BS02 FE2 1.14.11.21 GO:0005506 ... Q05581 10655615
    35 1dry:A (1.4) BS02 FE2 1.14.11.21 GO:0005506 ... Q05581 10655615
    36 1ds1:A (1.08) BS01 FE2 1.14.11.21 GO:0005506 ... Q05581 10655615
    37 1ds8:L (2.5) BS06 FE2 ? GO:0009772 ... P0C0Y8 10677497
    38 1ds8:M (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y9 10677497
    39 1ds8:R (2.5) BS06 FE2 ? GO:0009772 ... P0C0Y8 10677497
    40 1ds8:S (2.5) BS04 FE2 ? GO:0009772 ... P0C0Y9 10677497
    41 1dv3:L (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    42 1dv3:M (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497
    43 1dv3:R (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    44 1dv3:S (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497
    45 1dv6:L (2.5) BS04 FE2 ? GO:0009772 ... P0C0Y8 10677497
    46 1dv6:M (2.5) BS02 FE2 ? GO:0009772 ... P0C0Y9 10677497
    47 1dv6:R (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    48 1dv6:S (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497
    49 1dxr:L (2.0) BS04 FE2 ? GO:0009772 ... P06009 11005826
    50 1dxr:M (2.0) BS03 FE2 ? GO:0009772 ... P06010 11005826
    51 1e08:A (-1.00) BS05 FE2 1.12.7.2 N/A P07598 10748163
    52 1e5h:A (1.96) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 11352583
    53 1e5i:A (2.1) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 11352583
    54 1e5s:A (2.4) BS01 FE2 1.14.11.28 GO:0016706 ... O09345 11737217
    55 1e5s:B (2.4) BS01 FE2 1.14.11.28 GO:0016706 ... O09345 11737217
    56 1ey2:A (2.3) BS01 FE2 1.13.11.5 GO:0004411 ... Q93099 10876237
    57 1f8n:A (1.4) BS01 FE2 1.13.11.12 GO:0005506 ... P08170 11412104
    58 1fhm:A (1.5) BS01 FE2 ? GO:0005506 ... P00268 11344329
    59 1fyz:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    60 1fyz:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    61 1fyz:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    62 1fyz:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    63 1fz0:A (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    64 1fz0:A (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    65 1fz0:B (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    66 1fz0:B (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    67 1fz2:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    68 1fz2:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    69 1fz2:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    70 1fz2:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    71 1fz5:A (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    72 1fz5:B (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    73 1gp6:A (1.75) BS03 FE2 1.14.20.4 GO:0007033 ... Q96323 11796114
    74 1gqw:A (3.0) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 11955067
    75 1gqw:B (3.0) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 11955067
    76 1h2k:A (2.15) BS02 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 12446723
    77 1h2l:A (2.25) BS02 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 12446723
    78 1h2n:A (2.84) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 12446723
    79 1h79:A (2.9) BS02 FE2 1.1.98.6 GO:0003824 ... P07071 11587648
    80 1h7a:A (2.75) BS02 FE2 1.1.98.6 GO:0003824 ... P07071 11587648
    81 1hb1:A (1.55) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    82 1hb2:A (1.3) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    83 1hb3:A (1.4) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    84 1hb4:A (1.5) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    85 1hjf:A (1.6) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 11279000
    86 1hjg:A (1.5) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 11279000
    87 1isa:A (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    88 1isa:B (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    89 1j1l:A (2.1) BS01 FE2 1.13.11.24 GO:0003712 ... O00625 14573596
    90 1j8t:A (1.7) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    91 1j8u:A (1.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    92 1jnq:A (2.1) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 12964012
    93 1jqk:A (2.8) BS01 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    94 1jqk:B (2.8) BS02 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    95 1jqk:C (2.8) BS01 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    96 1jqk:D (2.8) BS02 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    97 1jqk:E (2.8) BS01 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    98 1jqk:F (2.8) BS02 FE2 1.2.7.4 GO:0003824 ... P31896 11593006
    99 1jr7:A (2.0) BS01 FE2 1.14.11.64 GO:0005506 ... P76621 11910018
    100 1kgo:A (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    101 1kgo:A (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    102 1kgo:B (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    103 1kgo:B (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    104 1kgo:C (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    105 1kgo:C (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    106 1kgo:D (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    107 1kgo:D (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    108 1kmy:A (2.0) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    109 1knd:A (1.9) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    110 1knd:A (1.9) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    111 1knf:A (1.9) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    112 1knf:A (1.9) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    113 1kw0:A (2.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 12126628
    114 1kw3:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    115 1kw6:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    116 1kw8:B (2.0) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    117 1kw9:B (1.95) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    118 1l9b:L (2.4) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    119 1l9b:M (2.4) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    120 1l9j:L (3.25) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    121 1l9j:M (3.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    122 1l9j:R (3.25) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    123 1l9j:S (3.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    124 1lgt:A (1.7) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    125 1lgt:A (1.7) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    126 1lkd:A (1.7) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    127 1lkd:A (1.7) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    128 1lko:A (1.63) BS01 FE2 ? GO:0005506 ... P24931 12175244
    129 1lko:A (1.63) BS02 FE2 ? GO:0005506 ... P24931 12175244
    130 1lko:A (1.63) BS03 FE2 ? GO:0005506 ... P24931 12175244
    131 1lkp:A (1.64) BS03 FE2 ? GO:0005506 ... P24931 12175244
    132 1lkp:A (1.64) BS04 FE2 ? GO:0005506 ... P24931 12175244
    133 1lkp:A (1.64) BS05 FE2 ? GO:0005506 ... P24931 12175244
    134 1lnh:A (2.6) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 9294864
    135 1lox:A (2.4) BS01 FE2 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33    		 GO:0001503 ... P12530 9406550
    136 1mmk:A (2.0) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 14568534
    137 1mmt:A (2.0) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 14568534
    138 1mps:L (2.55) BS06 FE2 ? GO:0009772 ... P0C0Y8 9537989
    139 1mps:M (2.55) BS04 FE2 ? GO:0009772 ... P0C0Y9 9537989
    140 1mpy:A (2.8) BS01 FE2 1.13.11.2 GO:0003824 ... P06622 10368270
    141 1mpy:B (2.8) BS01 FE2 1.13.11.2 GO:0003824 ... P06622 10368270
    142 1mpy:C (2.8) BS01 FE2 1.13.11.2 GO:0003824 ... P06622 10368270
    143 1mpy:D (2.8) BS01 FE2 1.13.11.2 GO:0003824 ... P06622 10368270
    144 1mze:A (2.2) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 12432100
    145 1mzf:A (2.4) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 12432100
    146 1n8q:A (2.1) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 14705020
    147 1nf4:A (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    148 1nf4:A (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    149 1nf4:B (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    150 1nf4:B (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    151 1nf4:C (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    152 1nf4:C (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    153 1nf4:D (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    154 1nf4:D (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    155 1nf4:E (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    156 1nf4:E (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    157 1nf4:F (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    158 1nf4:F (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    159 1nf4:G (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    160 1nf4:G (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    161 1nf4:H (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    162 1nf4:H (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    163 1nf4:I (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    164 1nf4:I (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    165 1nf4:J (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    166 1nf4:J (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    167 1nf4:K (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    168 1nf4:K (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    169 1nf4:L (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    170 1nf4:L (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    171 1nf4:M (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    172 1nf4:M (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    173 1nf4:N (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    174 1nf4:N (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    175 1nf4:O (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    176 1nf4:O (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    177 1nf4:P (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    178 1nf4:P (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    179 1oao:A (1.9) BS03 FE2 1.2.7.4 GO:0003824 ... P27989 12627225
    180 1oao:B (1.9) BS05 FE2 1.2.7.4 GO:0003824 ... P27989 12627225
    181 1obn:A (1.3) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12622704
    182 1oc1:A (2.2) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12622704
    183 1odm:A (1.15) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12926272
    184 1odn:A (1.6) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12926272
    185 1ogv:L (2.35) BS07 FE2 ? GO:0009772 ... P0C0Y8 12899837
    186 1ogv:M (2.35) BS08 FE2 ? GO:0009772 ... P0C0Y9 12899837
    187 1oii:A (2.19) BS01 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15023059
    188 1oii:B (2.19) BS01 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15023059
    189 1oii:C (2.19) BS01 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15023059
    190 1oii:D (2.19) BS01 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15023059
    191 1oik:A (2.06) BS03 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15023059
    192 1oik:D (2.06) BS03 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15023059
    193 1oqb:A (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    194 1oqb:B (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    195 1oqb:C (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    196 1oqb:D (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    197 1oqb:E (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    198 1oqb:F (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    199 1os7:A (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    200 1os7:B (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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