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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 2jd8:3 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1402 2jd8:4 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1403 2jd8:5 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1404 2jd8:6 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1405 2jd8:7 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1406 2jd8:8 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1407 2jd8:9 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1408 2jd8:A (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1409 2jd8:B (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1410 2jd8:C (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1411 2jd8:D (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1412 2jd8:E (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1413 2jd8:F (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1414 2jd8:G (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1415 2jd8:H (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1416 2jd8:I (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1417 2jd8:J (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1418 2jd8:K (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1419 2jd8:L (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1420 2jd8:M (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1421 2jd8:N (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1422 2jd8:O (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1423 2jd8:P (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1424 2jd8:Q (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1425 2jd8:R (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1426 2jd8:S (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1427 2jd8:T (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1428 2jd8:U (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1429 2jd8:V (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1430 2jd8:W (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1431 2jd8:X (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1432 2jd8:Y (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1433 2jd8:Z (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    1434 2ji1:A (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1435 2ji1:B (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1436 2ji1:C (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1437 2ji1:D (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1438 2ji2:A (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1439 2ji2:B (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1440 2ji2:C (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1441 2ji2:D (1.7) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1442 2ji3:A (1.95) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1443 2ji3:A (1.95) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1444 2ji3:B (1.95) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1445 2ji3:B (1.95) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1446 2ji3:C (1.95) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1447 2ji3:C (1.95) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1448 2ji3:D (1.95) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1449 2ji3:D (1.95) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 17446401
    1450 2jiy:L (2.2) BS06 FE ? GO:0009772 ... P0C0Y8 17711306
    1451 2jiy:M (2.2) BS05 FE ? GO:0009772 ... P0C0Y9 17711306
    1452 2jj0:L (2.8) BS06 FE ? GO:0009772 ... P0C0Y8 17711306
    1453 2jj0:M (2.8) BS05 FE ? GO:0009772 ... P0C0Y9 17711306
    1454 2nuv:A (2.25) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1455 2nwj:A (2.25) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1456 2o08:A (1.9) BS01 FE 3.6.1.41 GO:0000166 ... Q9KD90 N/A
    1457 2o08:A (1.9) BS02 FE 3.6.1.41 GO:0000166 ... Q9KD90 N/A
    1458 2o08:B (1.9) BS01 FE 3.6.1.41 GO:0000166 ... Q9KD90 N/A
    1459 2o08:B (1.9) BS02 FE 3.6.1.41 GO:0000166 ... Q9KD90 N/A
    1460 2o1l:A (1.97) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1461 2o1z:A (2.4) BS01 FE ? GO:0009263 ... A5K1H0 N/A
    1462 2o1z:B (2.4) BS01 FE ? GO:0009263 ... A5K1H0 N/A
    1463 2o51:A (3.0) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1464 2o68:A (1.7) BS01 FE ? GO:0006826 ... P35755 17147516
    1465 2o7u:A (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1466 2o7u:B (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1467 2o7u:C (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1468 2o7u:D (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1469 2o7u:E (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1470 2o7u:F (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1471 2o7u:G (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1472 2o7u:H (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1473 2o7u:I (2.8) BS01 FE ? GO:0005576 ... P02787 17327678
    1474 2o84:X (2.6) BS01 FE ? GO:0005576 ... P02787 17327678
    1475 2oc5:A (1.68) BS01 FE 4.1.99.5 GO:0016829 ... Q7V6D4 N/A
    1476 2oc5:A (1.68) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 N/A
    1477 2ocu:A (2.38) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1478 2ogi:A (1.85) BS01 FE 3.6.1.41 GO:0000166 ... Q8DY32 N/A
    1479 2ogi:A (1.85) BS02 FE 3.6.1.41 GO:0000166 ... Q8DY32 N/A
    1480 2ogi:B (1.85) BS01 FE 3.6.1.41 GO:0000166 ... Q8DY32 N/A
    1481 2ogi:B (1.85) BS02 FE 3.6.1.41 GO:0000166 ... Q8DY32 N/A
    1482 2ohh:A (1.7) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1483 2ohh:A (1.7) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1484 2ohh:B (1.7) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1485 2ohh:B (1.7) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1486 2ohh:D (1.7) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1487 2ohh:D (1.7) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1488 2ohh:E (1.7) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1489 2ohh:E (1.7) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1490 2ohi:A (2.3) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1491 2ohi:A (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1492 2ohi:B (2.3) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1493 2ohi:B (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1494 2ohi:D (2.3) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1495 2ohi:D (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1496 2ohi:E (2.3) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1497 2ohi:E (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1498 2ohi:G (2.3) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1499 2ohi:G (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1500 2ohi:H (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1501 2ohi:H (2.3) BS03 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1502 2ohi:I (2.3) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1503 2ohi:I (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1504 2ohi:J (2.3) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1505 2ohi:J (2.3) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1506 2ohj:A (2.26) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1507 2ohj:A (2.26) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1508 2ohj:B (2.26) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1509 2ohj:B (2.26) BS03 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1510 2ohj:D (2.26) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1511 2ohj:D (2.26) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1512 2ohj:E (2.26) BS01 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1513 2ohj:E (2.26) BS02 FE 1.5.3.22 GO:0009055 ... Q50497 17480207
    1514 2oof:A (2.2) BS01 FE 3.5.2.7 GO:0005506 ... A0KF84 N/A
    1515 2ows:A (1.49) BS01 FE ? GO:0030288 ... Q7VXW9 N/A
    1516 2owt:A (2.4) BS01 FE ? GO:0030288 ... Q7VXW9 N/A
    1517 2p17:A (1.52) BS01 FE ? GO:0046872 ... Q5KZF0 N/A
    1518 2p1i:A (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1519 2p1i:B (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1520 2p1i:C (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1521 2p1i:D (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1522 2p1i:E (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1523 2p1i:F (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1524 2p1i:G (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1525 2p1i:H (2.7) BS01 FE ? GO:0009263 ... Q7RIF3 N/A
    1526 2p1s:A (1.93) BS04 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1527 2p4z:A (2.1) BS01 FE ? GO:0016740 ... Q8R8V2 18431751
    1528 2p4z:A (2.1) BS02 FE ? GO:0016740 ... Q8R8V2 18431751
    1529 2p4z:B (2.1) BS01 FE ? GO:0016740 ... Q8R8V2 18431751
    1530 2p4z:B (2.1) BS02 FE ? GO:0016740 ... Q8R8V2 18431751
    1531 2p6b:A (2.3) BS03 FE 3.1.3.16 GO:0016787 ... Q08209 17498738
    1532 2p6b:C (2.3) BS03 FE 3.1.3.16 GO:0016787 ... Q08209 17498738
    1533 2pah:A (3.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9642259
    1534 2pah:B (3.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9642259
    1535 2pcd:M (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 7990141
    1536 2pcd:N (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 7990141
    1537 2pcd:O (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 7990141
    1538 2pcd:P (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 7990141
    1539 2pcd:Q (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 7990141
    1540 2pcd:R (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 7990141
    1541 2phd:A (2.9) BS01 FE 1.13.11.4 GO:0046872 ... Q67FT0 N/A
    1542 2phd:B (2.9) BS01 FE 1.13.11.4 GO:0046872 ... Q67FT0 N/A
    1543 2phd:C (2.9) BS01 FE 1.13.11.4 GO:0046872 ... Q67FT0 N/A
    1544 2phd:D (2.9) BS01 FE 1.13.11.4 GO:0046872 ... Q67FT0 N/A
    1545 2phm:A (2.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 10331871
    1546 2pms:A (2.91) BS02 FE 3.4.21.- GO:0005576 ... P02788 17543335
    1547 2pms:B (2.91) BS02 FE 3.4.21.- GO:0005576 ... P02788 17543335
    1548 2pq7:A (1.45) BS01 FE ? GO:0016787 ... Q1EM40 N/A
    1549 2pq7:A (1.45) BS02 FE ? GO:0016787 ... Q1EM40 N/A
    1550 2puz:A (1.83) BS01 FE 3.5.2.7 GO:0005506 ... Q8U8Z6 17640072
    1551 2puz:B (1.83) BS01 FE 3.5.2.7 GO:0005506 ... Q8U8Z6 17640072
    1552 2px1:A (2.5) BS03 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1553 2pya:A (0.86) BS01 FE ? GO:0005506 ... Q9V099 17712580
    1554 2pyb:A (2.6) BS01 FE ? GO:0008199 ... O51633 20851780
    1555 2pyb:B (2.6) BS01 FE ? GO:0008199 ... O51633 20851780
    1556 2pyb:C (2.6) BS01 FE ? GO:0008199 ... O51633 20851780
    1557 2pyb:D (2.6) BS01 FE ? GO:0008199 ... O51633 20851780
    1558 2q09:A (1.97) BS01 FE 3.5.2.7 GO:0005506 ... A0KF84 18442260
    1559 2q0i:A (1.57) BS01 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1560 2q0i:A (1.57) BS02 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1561 2q0j:A (2.1) BS01 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1562 2q0j:A (2.1) BS02 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1563 2q0j:B (2.1) BS01 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1564 2q0j:B (2.1) BS02 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1565 2q42:A (1.742) BS02 FE 3.1.2.6 GO:0004416 ... Q9SID3 17850744
    1566 2q42:B (1.742) BS02 FE 3.1.2.6 GO:0004416 ... Q9SID3 17850744
    1567 2q4a:A (2.39) BS01 FE 1.-.-.- GO:0005634 ... Q9LIG0 17850744
    1568 2q4a:B (2.39) BS01 FE 1.-.-.- GO:0005634 ... Q9LIG0 17850744
    1569 2q8j:A (2.71) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1570 2qdy:A (1.3) BS01 FE 4.2.1.84 GO:0003824 ... P13448 17716629
    1571 2qed:A (1.45) BS01 FE 3.1.2.6 GO:0004416 ... Q8ZRM2 17764159
    1572 2qed:A (1.45) BS02 FE 3.1.2.6 GO:0004416 ... Q8ZRM2 17764159
    1573 2qfp:A (2.2) BS01 FE 3.1.3.2 GO:0003993 ... P80366 18234116
    1574 2qfp:B (2.2) BS01 FE 3.1.3.2 GO:0003993 ... P80366 18234116
    1575 2qfp:C (2.2) BS01 FE 3.1.3.2 GO:0003993 ... P80366 18234116
    1576 2qfp:D (2.2) BS01 FE 3.1.3.2 GO:0003993 ... P80366 18234116
    1577 2qfr:A (2.4) BS01 FE 3.1.3.2 GO:0003993 ... P80366 18234116
    1578 2qfr:B (2.4) BS01 FE 3.1.3.2 GO:0003993 ... P80366 18234116
    1579 2qje:A (2.3) BS03 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1580 2r71:A (2.07) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1581 2r9j:A (2.55) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1582 2rcr:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 2036404
    1583 2rcr:M (3.1) BS04 FE ? GO:0009772 ... P0C0Y9 2036404
    1584 2rdb:A (2.1) BS01 FE ? GO:0004497 ... O87798 18044971
    1585 2rdb:A (2.1) BS02 FE ? GO:0004497 ... O87798 18044971
    1586 2rdn:A (1.35) BS01 FE 1.14.11.35 GO:0005506 ... Q82IZ1 17942405
    1587 2rdq:A (1.31) BS01 FE 1.14.11.35 GO:0005506 ... Q82IZ1 17942405
    1588 2rdr:A (1.7) BS01 FE 1.14.11.35 GO:0005506 ... Q82IZ1 17942405
    1589 2rds:A (1.65) BS01 FE 1.14.11.35 GO:0005506 ... Q82IZ1 17942405
    1590 2rdv:A (1.9) BS01 FE ? GO:0005506 ... P15412 10089348
    1591 2rdv:B (1.9) BS01 FE ? GO:0005506 ... P15412 10089348
    1592 2rdv:C (1.9) BS01 FE ? GO:0005506 ... P15412 10089348
    1593 2rg4:A (1.9) BS01 FE ? GO:0046872 ... Q2CBJ1 N/A
    1594 2rg4:B (1.9) BS01 FE ? GO:0046872 ... Q2CBJ1 N/A
    1595 2sbl:A (2.6) BS01 FE 1.13.11.12 GO:0005506 ... P08170 8502991
    1596 2sbl:B (2.6) BS01 FE 1.13.11.12 GO:0005506 ... P08170 8502991
    1597 2toh:A (2.3) BS01 FE 1.14.16.2 GO:0004497 ... P04177 9753429
    1598 2uw1:A (1.95) BS01 FE N/A GO:0006631 ... N/A 17463003
    1599 2uw1:A (1.95) BS02 FE N/A GO:0006631 ... N/A 17463003
    1600 2uw1:B (1.95) BS01 FE N/A GO:0006631 ... N/A 17463003
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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