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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1s5l:a (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    602 1s5l:d (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    603 1s9a:A (2.47) BS01 FE 1.13.11.- GO:0003824 ... O67987 15060064
    604 1s9a:B (2.47) BS01 FE 1.13.11.- GO:0003824 ... O67987 15060064
    605 1shr:A (1.88) BS02 FE ? GO:0004601 ... P69905 15449937
    606 1shr:B (1.88) BS02 FE ? GO:0004601 ... P02042 15449937
    607 1si0:A (1.35) BS01 FE ? GO:0030288 ... Q9Z4N6 15175304
    608 1si1:A (1.45) BS01 FE ? GO:0030288 ... Q9Z4N6 15175304
    609 1smm:A (1.36) BS01 FE ? GO:0005506 ... P00268 15067525
    610 1sq3:A (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    611 1sq3:A (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    612 1sq3:A (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    613 1sq3:B (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    614 1sq3:B (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    615 1sq3:B (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    616 1sq3:C (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    617 1sq3:C (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    618 1sq3:C (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    619 1sq3:D (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    620 1sq3:D (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    621 1sq3:D (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    622 1sq3:E (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    623 1sq3:E (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    624 1sq3:E (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    625 1sq3:F (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    626 1sq3:F (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    627 1sq3:F (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    628 1sq3:G (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    629 1sq3:G (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    630 1sq3:G (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    631 1sq3:H (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    632 1sq3:H (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    633 1sq3:H (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    634 1sq3:I (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    635 1sq3:I (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    636 1sq3:I (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    637 1sq3:J (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    638 1sq3:J (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    639 1sq3:J (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    640 1sq3:K (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    641 1sq3:K (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    642 1sq3:K (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    643 1sq3:L (2.7) BS01 FE ? GO:0004322 ... O29424 15837202
    644 1sq3:L (2.7) BS02 FE ? GO:0004322 ... O29424 15837202
    645 1sq3:L (2.7) BS03 FE ? GO:0004322 ... O29424 15837202
    646 1sqd:A (1.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 15301540
    647 1sqi:A (2.15) BS01 FE 1.13.11.27 GO:0000139 ... P32755 15301540
    648 1sqi:B (2.15) BS01 FE 1.13.11.27 GO:0000139 ... P32755 15301540
    649 1sqy:A (2.5) BS01 FE 3.4.21.- GO:0001503 ... P02788 N/A
    650 1sqy:A (2.5) BS02 FE 3.4.21.- GO:0001503 ... P02788 N/A
    651 1sum:B (2.0) BS01 FE ? GO:0005737 ... Q9X256 15716271
    652 1sum:B (2.0) BS02 FE ? GO:0005737 ... Q9X256 15716271
    653 1sum:B (2.0) BS03 FE ? GO:0005737 ... Q9X256 15716271
    654 1sum:B (2.0) BS04 FE ? GO:0005737 ... Q9X256 15716271
    655 1sum:B (2.0) BS05 FE ? GO:0005737 ... Q9X256 15716271
    656 1sum:B (2.0) BS06 FE ? GO:0005737 ... Q9X256 15716271
    657 1sum:B (2.0) BS07 FE ? GO:0005737 ... Q9X256 15716271
    658 1suv:C (7.5) BS02 FE ? GO:0005576 ... P02787 14980223
    659 1suv:D (7.5) BS02 FE ? GO:0005576 ... P02787 14980223
    660 1suv:E (7.5) BS02 FE N/A GO:0005576 ... N/A 14980223
    661 1suv:F (7.5) BS02 FE N/A GO:0005576 ... N/A 14980223
    662 1syy:A (1.7) BS01 FE 1.17.4.1 GO:0004748 ... O84835 15247479
    663 1syy:A (1.7) BS02 FE 1.17.4.1 GO:0004748 ... O84835 15247479
    664 1t0q:A (2.15) BS01 FE ? GO:0004497 ... O87798 15096510
    665 1t0q:A (2.15) BS02 FE ? GO:0004497 ... O87798 15096510
    666 1t0r:A (2.3) BS01 FE ? GO:0004497 ... O87798 15096510
    667 1t0r:A (2.3) BS02 FE ? GO:0004497 ... O87798 15096510
    668 1t0s:A (2.2) BS01 FE ? GO:0004497 ... O87798 15096510
    669 1t0s:A (2.2) BS02 FE ? GO:0004497 ... O87798 15096510
    670 1t71:A (2.1) BS01 FE 3.1.-.- GO:0004113 ... P75429 N/A
    671 1t71:A (2.1) BS02 FE 3.1.-.- GO:0004113 ... P75429 N/A
    672 1t9o:A (2.0) BS01 FE ? GO:0005506 ... P00268 15382226
    673 1t9o:B (2.0) BS01 FE ? GO:0005506 ... P00268 15382226
    674 1t9o:C (2.0) BS01 FE ? GO:0005506 ... P00268 15382226
    675 1t9p:A (1.5) BS01 FE ? GO:0005506 ... P00268 15382226
    676 1t9p:B (1.5) BS01 FE ? GO:0005506 ... P00268 15382226
    677 1t9p:C (1.5) BS01 FE ? GO:0005506 ... P00268 15382226
    678 1t9q:A (1.8) BS01 FE ? GO:0005506 ... P00268 15382226
    679 1tco:A (2.5) BS02 FE 3.1.3.16 GO:0016787 ... P48452 7543369
    680 1tdw:A (2.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 15557004
    681 1tfd:A (2.3) BS02 FE ? GO:0005576 ... P19134 N/A
    682 1tfz:A (1.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 15301540
    683 1tg2:A (2.2) BS01 FE 1.14.16.1 GO:0004497 ... P00439 15557004
    684 1tjo:A (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    685 1tjo:B (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    686 1tjo:C (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    687 1tjo:D (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    688 1tk6:A (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    689 1tk6:B (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    690 1tk6:C (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    691 1tk6:D (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    692 1tko:A (2.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    693 1tko:A (2.9) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    694 1tko:A (2.9) BS03 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    695 1tko:B (2.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    696 1tko:B (2.9) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    697 1tko:B (2.9) BS03 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    698 1tko:C (2.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    699 1tko:C (2.9) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    700 1tko:C (2.9) BS03 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    701 1tko:D (2.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    702 1tko:D (2.9) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    703 1tkp:A (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    704 1tkp:A (2.2) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    705 1tkp:B (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    706 1tkp:B (2.2) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    707 1tkp:B (2.2) BS03 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    708 1tkp:C (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    709 1tkp:C (2.2) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    710 1tkp:D (2.2) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    711 1tkp:D (2.2) BS02 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    712 1tmx:A (1.75) BS01 FE 1.13.11.37 GO:0003824 ... Q5PXQ6 15772073
    713 1tmx:B (1.75) BS01 FE 1.13.11.37 GO:0003824 ... Q5PXQ6 15772073
    714 1toh:A (2.3) BS01 FE 1.14.16.2 GO:0004497 ... P04177 9228951
    715 1uer:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    716 1uer:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    717 1uer:C (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    718 1uer:D (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    719 1umx:L (2.8) BS05 FE ? GO:0009772 ... P0C0Y8 14741581
    720 1umx:M (2.8) BS05 FE ? GO:0009772 ... P0C0Y9 14741581
    721 1unf:X (1.97) BS01 FE 1.15.1.1 GO:0004784 ... Q9M7R2 15659371
    722 1uuv:A (1.65) BS04 FE 1.14.12.12 GO:0005506 ... P0A110 15942729
    723 1uuw:A (2.3) BS02 FE 1.14.12.12 GO:0005506 ... P0A110 15942729
    724 1uvh:A (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    725 1uvh:B (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    726 1uvh:C (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    727 1uvh:D (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    728 1uzr:A (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P9WH71 15225619
    729 1uzr:A (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P9WH71 15225619
    730 1uzr:B (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P9WH71 15225619
    731 1uzr:B (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P9WH71 15225619
    732 1uzr:C (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P9WH71 15225619
    733 1uzr:C (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P9WH71 15225619
    734 1vcx:A (1.5) BS01 FE ? GO:0009055 ... P24297 15272083
    735 1vei:A (2.85) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    736 1veq:A (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    737 1veq:A (3.98) BS02 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    738 1veq:B (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    739 1veq:B (3.98) BS02 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    740 1veq:C (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    741 1veq:D (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    742 1veq:D (3.98) BS02 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    743 1veq:E (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    744 1veq:F (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    745 1veq:G (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    746 1veq:H (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    747 1veq:I (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    748 1veq:J (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    749 1veq:J (3.98) BS02 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    750 1veq:K (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    751 1veq:L (3.98) BS01 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    752 1veq:L (3.98) BS02 FE 1.16.-.- GO:0003677 ... P0C558 15178251
    753 1vfd:A (2.5) BS01 FE 3.4.21.- GO:0005576 ... P02788 8931543
    754 1vfe:A (2.3) BS01 FE 3.4.21.- GO:0005576 ... P02788 8931543
    755 1vlg:A (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    756 1vlg:B (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    757 1vlg:C (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    758 1vlg:D (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    759 1vlg:E (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    760 1vlg:F (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    761 1vlg:G (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    762 1vlg:H (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    763 1vlj:A (1.78) BS01 FE 1.1.1.- GO:0000166 ... Q9WZS7 N/A
    764 1vlj:B (1.78) BS01 FE 1.1.1.- GO:0000166 ... Q9WZS7 N/A
    765 1vrb:A (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    766 1vrb:B (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    767 1vrb:C (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    768 1vrb:D (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    769 1vzg:A (1.69) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    770 1vzg:A (1.69) BS03 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    771 1vzg:B (1.69) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    772 1vzg:B (1.69) BS04 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    773 1vzh:A (1.69) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    774 1vzh:A (1.69) BS03 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    775 1vzh:B (1.69) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    776 1vzh:B (1.69) BS03 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    777 1w2a:X (2.51) BS01 FE 1.14.20.1 GO:0005506 ... P18548 15381427
    778 1w2n:A (2.7) BS01 FE 1.14.20.1 GO:0005506 ... P18548 15381427
    779 1w2o:A (3.0) BS01 FE 1.14.20.1 GO:0005506 ... P18548 15381427
    780 1war:A (2.22) BS01 FE 3.1.3.2 GO:0003993 ... P13686 15993892
    781 1war:A (2.22) BS02 FE 3.1.3.2 GO:0003993 ... P13686 15993892
    782 1wb7:A (2.24) BS01 FE 1.15.1.1 GO:0004784 ... P80857 14979716
    783 1wb7:B (2.24) BS01 FE 1.15.1.1 GO:0004784 ... P80857 14979716
    784 1wb8:A (2.3) BS01 FE 1.15.1.1 GO:0004784 ... P80857 9931259
    785 1wb8:B (2.3) BS01 FE 1.15.1.1 GO:0004784 ... P80857 9931259
    786 1wra:A (2.0) BS01 FE 3.1.4.38 N/A Q8DQ62 15908436
    787 1wra:A (2.0) BS02 FE 3.1.4.38 N/A Q8DQ62 15908436
    788 1wra:B (2.0) BS01 FE 3.1.4.38 N/A Q8DQ62 15908436
    789 1wra:B (2.0) BS02 FE 3.1.4.38 N/A Q8DQ62 15908436
    790 1xen:A (1.85) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 15796505
    791 1xm8:A (1.74) BS02 FE 3.1.2.6 GO:0004416 ... Q9SID3 16227621
    792 1xm8:B (1.74) BS02 FE 3.1.2.6 GO:0004416 ... Q9SID3 16227621
    793 1xsm:A (2.3) BS01 FE 1.17.4.1 GO:0001824 ... P11157 8876648
    794 1xu3:A (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    795 1xu3:A (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    796 1xu3:B (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    797 1xu3:B (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    798 1xu5:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    799 1xu5:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    800 1xu5:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218