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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 7qbv:B (2.701) BS02 FE 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    6002 7qbv:C (2.701) BS02 FE 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    6003 7qbv:D (2.701) BS02 FE 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    6004 7qh2:C (2.43) BS02 FE 1.1.1.436 GO:0003824 ... H6LBS1 35748623
    6005 7qh2:F (2.43) BS02 FE 1.1.1.436 GO:0003824 ... H6LBS1 35748623
    6006 7qlg:AAA (2.0) BS02 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6007 7qlg:BBB (2.0) BS01 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6008 7qlq:AAA (2.6) BS03 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6009 7qlq:BBB (2.6) BS03 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6010 7qls:AAA (2.4) BS03 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6011 7qls:BBB (2.4) BS03 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6012 7qnf:AAA (2.14) BS01 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6013 7qnf:BBB (2.14) BS01 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6014 7qnh:AAA (2.2) BS02 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6015 7qnh:BBB (2.2) BS02 FE 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    6016 7qnj:AAA (1.66) BS01 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6017 7qnj:BBB (1.66) BS01 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6018 7qr6:A (2.9) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 35687874
    6019 7qr6:B (2.9) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 35687874
    6020 7qr6:C (2.9) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 35687874
    6021 7qwt:A (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6022 7qwt:B (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6023 7qwt:C (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6024 7qwt:D (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6025 7qwt:E (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6026 7qwt:F (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6027 7qwt:G (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6028 7qwt:H (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6029 7qwt:I (3.712) BS02 FE N/A GO:0016491 ... N/A N/A
    6030 7r0f:A (1.978) BS02 FE ? GO:0005506 ... Q46877 N/A
    6031 7r0f:A (1.978) BS03 FE ? GO:0005506 ... Q46877 N/A
    6032 7r0f:B (1.978) BS02 FE ? GO:0005506 ... Q46877 N/A
    6033 7r0f:B (1.978) BS03 FE ? GO:0005506 ... Q46877 N/A
    6034 7r0p:AAA (1.6) BS02 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6035 7r0p:BBB (1.6) BS02 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6036 7r1h:A (1.96) BS02 FE ? GO:0005506 ... Q46877 N/A
    6037 7r1h:A (1.96) BS03 FE ? GO:0005506 ... Q46877 N/A
    6038 7r1h:B (1.96) BS02 FE ? GO:0005506 ... Q46877 N/A
    6039 7r1h:B (1.96) BS03 FE ? GO:0005506 ... Q46877 N/A
    6040 7r1j:A (1.901) BS02 FE ? GO:0005506 ... Q46877 N/A
    6041 7r1j:A (1.901) BS03 FE ? GO:0005506 ... Q46877 N/A
    6042 7r1j:B (1.901) BS02 FE ? GO:0005506 ... Q46877 N/A
    6043 7r1j:B (1.901) BS03 FE ? GO:0005506 ... Q46877 N/A
    6044 7r2p:A (2.538) BS02 FE ? GO:0005506 ... Q46877 N/A
    6045 7r2p:A (2.538) BS03 FE ? GO:0005506 ... Q46877 N/A
    6046 7r2p:B (2.538) BS02 FE ? GO:0005506 ... Q46877 N/A
    6047 7r2p:B (2.538) BS03 FE ? GO:0005506 ... Q46877 N/A
    6048 7r2r:A (2.198) BS02 FE ? GO:0005506 ... Q46877 N/A
    6049 7r2r:A (2.198) BS03 FE ? GO:0005506 ... Q46877 N/A
    6050 7r2r:B (2.198) BS02 FE ? GO:0005506 ... Q46877 N/A
    6051 7r2r:B (2.198) BS03 FE ? GO:0005506 ... Q46877 N/A
    6052 7r2s:A (2.194) BS02 FE ? GO:0005506 ... Q46877 N/A
    6053 7r2s:A (2.194) BS03 FE ? GO:0005506 ... Q46877 N/A
    6054 7r2s:B (2.194) BS02 FE ? GO:0005506 ... Q46877 N/A
    6055 7r2s:B (2.194) BS03 FE ? GO:0005506 ... Q46877 N/A
    6056 7r3d:AAA (1.4) BS02 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6057 7r3d:BBB (1.4) BS02 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6058 7r3e:A (3.46) BS01 FE 3.1.2.32 GO:0000976 ... P20581
    P54292    		 36456567
    6059 7r3e:A (3.46) BS02 FE 3.1.2.32 GO:0000976 ... P20581
    P54292    		 36456567
    6060 7r3e:B (3.46) BS01 FE 3.1.2.32 GO:0000976 ... P20581
    P54292    		 36456567
    6061 7r3e:B (3.46) BS02 FE 3.1.2.32 GO:0000976 ... P20581
    P54292    		 36456567
    6062 7r3f:A (1.65) BS01 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6063 7r3f:A (1.65) BS02 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6064 7r3j:A (3.06) BS01 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6065 7r3j:A (3.06) BS02 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6066 7r3j:B (3.06) BS01 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6067 7r3j:B (3.06) BS02 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6068 7r4z:A (2.75) BS02 FE ? N/A A0A4R2M5S2 35527501
    6069 7r4z:B (2.75) BS02 FE ? N/A A0A4R2M5S2 35527501
    6070 7r5t:AAA (1.85) BS03 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6071 7r5t:BBB (1.85) BS03 FE 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    6072 7rwy:C (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    6073 7rwy:C (2.2) BS02 FE ? GO:0005506 ... P0ABE7 35642584
    6074 7rwy:D (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    6075 7rwy:D (2.2) BS02 FE ? GO:0005506 ... P0ABE7 35642584
    6076 7rwy:E (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    6077 7rwy:F (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    6078 7rxn:A (1.5) BS01 FE ? GO:0005506 ... P00269 1992166
    6079 7s5c:A (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6080 7s5c:A (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6081 7s5c:A (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6082 7s5c:A (1.86) BS05 FE ? N/A Q1D6H3 35150605
    6083 7s5c:B (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6084 7s5c:B (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6085 7s5c:B (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6086 7s5c:B (1.86) BS04 FE ? N/A Q1D6H3 35150605
    6087 7s5c:C (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6088 7s5c:C (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6089 7s5c:D (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6090 7s5c:D (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6091 7s5c:D (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6092 7s5c:E (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6093 7s5c:E (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6094 7s5c:E (1.86) BS04 FE ? N/A Q1D6H3 35150605
    6095 7s5c:F (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6096 7s5c:F (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6097 7s5c:F (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6098 7s5c:F (1.86) BS04 FE ? N/A Q1D6H3 35150605
    6099 7s5c:G (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6100 7s5c:G (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6101 7s5c:G (1.86) BS04 FE ? N/A Q1D6H3 35150605
    6102 7s5c:H (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6103 7s5c:H (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6104 7s5c:H (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6105 7s5c:I (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6106 7s5c:I (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6107 7s5c:I (1.86) BS04 FE ? N/A Q1D6H3 35150605
    6108 7s5c:J (1.86) BS01 FE ? N/A Q1D6H3 35150605
    6109 7s5c:J (1.86) BS02 FE ? N/A Q1D6H3 35150605
    6110 7s5c:J (1.86) BS03 FE ? N/A Q1D6H3 35150605
    6111 7s5k:A (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6112 7s5k:A (1.95) BS03 FE ? N/A Q1D6H3 35150605
    6113 7s5k:B (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6114 7s5k:B (1.95) BS02 FE ? N/A Q1D6H3 35150605
    6115 7s5k:B (1.95) BS03 FE ? N/A Q1D6H3 35150605
    6116 7s5k:C (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6117 7s5k:C (1.95) BS02 FE ? N/A Q1D6H3 35150605
    6118 7s5k:D (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6119 7s5k:E (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6120 7s5k:E (1.95) BS03 FE ? N/A Q1D6H3 35150605
    6121 7s5k:F (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6122 7s5k:F (1.95) BS02 FE ? N/A Q1D6H3 35150605
    6123 7s5k:G (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6124 7s5k:G (1.95) BS02 FE ? N/A Q1D6H3 35150605
    6125 7s5k:G (1.95) BS04 FE ? N/A Q1D6H3 35150605
    6126 7s5k:H (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6127 7s5k:H (1.95) BS02 FE ? N/A Q1D6H3 35150605
    6128 7s5k:H (1.95) BS03 FE ? N/A Q1D6H3 35150605
    6129 7s5k:I (1.95) BS02 FE ? N/A Q1D6H3 35150605
    6130 7s5k:J (1.95) BS01 FE ? N/A Q1D6H3 35150605
    6131 7s5k:J (1.95) BS02 FE ? N/A Q1D6H3 35150605
    6132 7s6q:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6133 7s6q:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6134 7s6q:E (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6135 7s6q:E (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6136 7s6r:A (1.89) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6137 7s6r:A (1.89) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6138 7s6r:E (1.89) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6139 7s6r:E (1.89) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6140 7s6s:A (1.98) BS01 FE ? GO:0004497 ... A0A2D2D5X0 34910460
    6141 7s6s:A (1.98) BS02 FE ? GO:0004497 ... A0A2D2D5X0 34910460
    6142 7s6s:E (1.98) BS01 FE ? GO:0004497 ... A0A2D2D5X0 34910460
    6143 7s6s:E (1.98) BS02 FE ? GO:0004497 ... A0A2D2D5X0 34910460
    6144 7s6t:A (1.82) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6145 7s6t:A (1.82) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6146 7s6t:E (1.82) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6147 7s6t:E (1.82) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6148 7s7h:A (2.4) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6149 7s7h:A (2.4) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6150 7s7h:E (2.4) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6151 7s7h:E (2.4) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34910460
    6152 7s8t:A (2.49) BS01 FE ? GO:0006879 ... Q1D3Y8 35150605
    6153 7s8t:E (2.49) BS01 FE ? GO:0006879 ... Q1D3Y8 35150605
    6154 7s8t:F (2.49) BS01 FE ? GO:0006879 ... Q1D3Y8 35150605
    6155 7s8t:G (2.49) BS01 FE ? GO:0006879 ... Q1D3Y8 35150605
    6156 7s8t:H (2.49) BS01 FE ? GO:0006879 ... Q1D3Y8 35150605
    6157 7s8t:I (2.49) BS01 FE ? GO:0006879 ... Q1D3Y8 35150605
    6158 7s8t:I (2.49) BS02 FE ? GO:0006879 ... Q1D3Y8 35150605
    6159 7s8t:J (2.49) BS01 FE ? GO:0006879 ... Q1D3Y8 35150605
    6160 7sbh:A (1.34) BS02 FE 1.15.1.1 GO:0000166 ... A0A031LR83 35279679
    6161 7sf6:A (1.46) BS03 FE ? GO:0006826 ... Q24WN9 N/A
    6162 7soi:A (2.0) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    6163 7soi:B (2.0) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    6164 7soj:A (1.85) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    6165 7soj:B (1.85) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    6166 7stw:A (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6167 7stw:B (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6168 7stw:C (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6169 7stw:D (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6170 7stw:E (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6171 7stw:F (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6172 7stw:G (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6173 7stw:H (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6174 7stw:I (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6175 7stw:J (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6176 7stw:K (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6177 7stw:L (2.37) BS02 FE 1.16.-.- GO:0003677 ... Q8U1L3 N/A
    6178 7sze:A (1.74) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    6179 7sze:B (1.74) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    6180 7sze:C (1.74) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    6181 7szf:A (1.79) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    6182 7szf:B (1.79) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    6183 7szf:C (1.79) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    6184 7szg:A (2.69) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    6185 7szg:B (2.69) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    6186 7szg:C (2.69) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    6187 7szh:A (1.79) BS03 FE ? GO:0005506 ... C3RVQ0 35017498
    6188 7szh:B (1.79) BS03 FE ? GO:0005506 ... C3RVQ0 35017498
    6189 7szh:C (1.79) BS03 FE ? GO:0005506 ... C3RVQ0 35017498
    6190 7tc7:D (2.9) BS01 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6191 7tc7:D (2.9) BS02 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6192 7tc7:E (2.9) BS01 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6193 7tc7:E (2.9) BS02 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6194 7tc8:D (2.4) BS01 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6195 7tc8:D (2.4) BS02 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6196 7tc8:E (2.4) BS01 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6197 7tc8:E (2.4) BS02 FE 1.14.13.25 GO:0004497 ... P22869 36926824
    6198 7tcr:A (2.62) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    6199 7tcr:A (2.62) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    6200 7tcr:A (2.62) BS03 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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