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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a8e:A (1.6) BS02 FE ? GO:0005576 ... P02787 9609685
    2 1a8f:A (1.8) BS02 FE ? GO:0005576 ... P02787 9609685
    3 1ahj:A (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    4 1ahj:C (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    5 1ahj:E (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    6 1ahj:G (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    7 1aor:A (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    8 1aor:B (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    9 1ar5:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    10 1ar5:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    11 1aui:A (2.1) BS02 FE 3.1.3.16 GO:0000082 ... Q08209 8524402
    12 1avm:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    13 1avm:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    14 1b06:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    15 1b06:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    16 1b06:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    17 1b06:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    18 1b06:E (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    19 1b06:F (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    20 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 10089347
    21 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 10089347
    22 1b13:A (1.5) BS01 FE ? GO:0005506 ... P00268 10216292
    23 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001503 ... O77811 10366507
    24 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001503 ... O77811 10366507
    25 1b2j:A (1.6) BS01 FE ? GO:0005506 ... P00268 10216292
    26 1b2o:A (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    27 1b2o:B (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    28 1b3e:A (2.5) BS01 FE ? GO:0005576 ... P02787 10029548
    29 1b4u:B (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    30 1b4u:D (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    31 1b71:A (1.9) BS01 FE ? GO:0005506 ... P24931 10201393
    32 1b71:A (1.9) BS02 FE ? GO:0005506 ... P24931 10201393
    33 1b7z:A (2.7) BS01 FE 3.4.21.- GO:0001503 ... O77811 10531474
    34 1b7z:A (2.7) BS02 FE 3.4.21.- GO:0001503 ... O77811 10531474
    35 1be7:A (1.65) BS01 FE ? GO:0005506 ... P00268 N/A
    36 1bfy:A (-1.00) BS01 FE 1.18.1.1 GO:0005506 ... P00268 N/A
    37 1biq:A (2.05) BS02 FE 1.17.4.1 GO:0004748 ... P69924 9692970
    38 1biy:A (3.37) BS01 FE 3.4.21.- GO:0001503 ... O77698 10818344
    39 1biy:A (3.37) BS02 FE 3.4.21.- GO:0001503 ... O77698 10818344
    40 1bk0:A (1.3) BS01 FE 1.21.3.1 GO:0005506 ... P05326 9194566
    41 1bka:A (2.4) BS01 FE 3.4.21.- GO:0001503 ... P02788 8703903
    42 1bka:A (2.4) BS02 FE 3.4.21.- GO:0001503 ... P02788 8703903
    43 1blf:A (2.8) BS02 FE 3.4.21.- GO:0001503 ... P24627 9398529
    44 1blf:A (2.8) BS03 FE 3.4.21.- GO:0001503 ... P24627 9398529
    45 1blz:A (1.45) BS01 FE 1.21.3.1 GO:0005506 ... P05326 9194566
    46 1bou:B (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    47 1bou:D (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    48 1bq8:A (1.1) BS01 FE ? GO:0005506 ... P24297 N/A
    49 1bq9:A (1.2) BS01 FE ? GO:0005506 ... P24297 N/A
    50 1brf:A (0.95) BS01 FE ? GO:0005506 ... P24297 N/A
    51 1bs3:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    52 1bs3:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    53 1bsm:A (1.35) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    54 1bsm:B (1.35) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    55 1bsz:A (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    56 1bsz:B (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    57 1bsz:C (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    58 1bt8:A (1.85) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    59 1bt8:B (1.85) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    60 1c09:A (1.6) BS01 FE ? GO:0005506 ... P00268 10555962
    61 1c09:B (1.6) BS01 FE ? GO:0005506 ... P00268 10555962
    62 1c09:C (1.6) BS01 FE ? GO:0005506 ... P00268 10555962
    63 1caa:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    64 1cad:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    65 1ce2:A (2.5) BS01 FE 3.4.21.- GO:0001503 ... O77698 10531476
    66 1ce2:A (2.5) BS02 FE 3.4.21.- GO:0001503 ... O77698 10531476
    67 1coj:A (1.9) BS01 FE 1.15.1.1 GO:0004784 ... Q9X6W9 9236127
    68 1d3k:A (1.8) BS02 FE ? GO:0005576 ... P02787 10739246
    69 1d4n:A (2.0) BS02 FE ? GO:0005576 ... P02787 10739246
    70 1d9y:A (2.2) BS01 FE ? GO:0006826 ... Q50964 N/A
    71 1dfx:A (1.9) BS01 FE 1.15.1.2 GO:0005506 ... P22076 N/A
    72 1dfx:A (1.9) BS02 FE 1.15.1.2 GO:0005506 ... P22076 N/A
    73 1dhy:A (2.3) BS01 FE 1.13.11.39 GO:0003824 ... P17297 8636975
    74 1dlm:A (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    75 1dlm:B (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    76 1dlq:A (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    77 1dlq:B (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    78 1dlt:A (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    79 1dlt:B (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    80 1dmh:A (1.7) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    81 1dmh:B (1.7) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    82 1dmw:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 10694386
    83 1do6:A (2.0) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    84 1do6:B (2.0) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    85 1dot:A (2.35) BS01 FE ? GO:0005576 ... P56410 15299626
    86 1dot:A (2.35) BS02 FE ? GO:0005576 ... P56410 15299626
    87 1dqi:A (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    88 1dqi:B (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    89 1dqi:C (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    90 1dqi:D (1.7) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    91 1dsn:A (2.05) BS01 FE 3.4.21.- GO:0005576 ... P02788 8594202
    92 1dt0:A (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 11053832
    93 1dt0:B (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 11053832
    94 1dt0:C (2.1) BS01 FE 1.15.1.1 GO:0004784 ... P09223 11053832
    95 1dtg:A (2.4) BS01 FE ? GO:0005576 ... P02787 10684598
    96 1dvb:A (1.9) BS01 FE ? GO:0005506 ... P24931 10968622
    97 1dvb:A (1.9) BS02 FE ? GO:0005506 ... P24931 10968622
    98 1dxg:A (1.8) BS01 FE ? GO:0005506 ... P00273 7666420
    99 1dxg:B (1.8) BS01 FE ? GO:0005506 ... P00273 7666420
    100 1e14:L (2.7) BS07 FE ? GO:0009772 ... P0C0Y8 10821666
    101 1e14:M (2.7) BS06 FE ? GO:0009772 ... P0C0Y9 10821666
    102 1e6d:L (2.3) BS07 FE ? GO:0009772 ... P0C0Y8 11042110
    103 1e6d:M (2.3) BS06 FE ? GO:0009772 ... P0C0Y9 11042110
    104 1eg9:A (1.6) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 10669618
    105 1eh3:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 10828980
    106 1eil:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    107 1eiq:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    108 1eir:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    109 1eo2:B (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    110 1eo9:B (2.0) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    111 1eoa:B (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    112 1eob:B (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    113 1eoc:B (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P20372 10891075
    114 1eys:L (2.2) BS04 FE N/A GO:0009772 ... N/A 11095707
    115 1eys:M (2.2) BS03 FE N/A GO:0009772 ... N/A 11095707
    116 1f6n:L (2.8) BS06 FE ? GO:0009772 ... P0C0Y8 11284681
    117 1f6n:M (2.8) BS04 FE ? GO:0009772 ... P0C0Y9 11284681
    118 1f9b:A (2.7) BS01 FE 3.4.21.- GO:0005576 ... O77811 11599026
    119 1f9b:A (2.7) BS02 FE 3.4.21.- GO:0005576 ... O77811 11599026
    120 1fgm:A (1.9) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    121 1fgo:A (1.62) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    122 1fgq:A (1.85) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    123 1fgr:A (1.6) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    124 1fgt:A (1.62) BS01 FE 1.13.11.12 GO:0005506 ... P08170 11412104
    125 1fha:A (2.4) BS01 FE 1.16.3.1 GO:0004322 ... P02794 1992356
    126 1fhh:A (1.5) BS01 FE ? GO:0005506 ... P00268 11344329
    127 1fnp:L (2.6) BS05 FE ? GO:0009772 ... P0C0Y8 11284681
    128 1fnp:M (2.6) BS03 FE ? GO:0009772 ... P0C0Y9 11284681
    129 1fnq:L (2.6) BS05 FE ? GO:0009772 ... P0C0Y8 11284681
    130 1fnq:M (2.6) BS03 FE ? GO:0009772 ... P0C0Y9 11284681
    131 1fqe:A (1.8) BS01 FE ? GO:0005576 ... P02787 11327820
    132 1fqf:A (2.1) BS01 FE ? GO:0005576 ... P02787 11327820
    133 1frf:L (2.7) BS01 FE 1.12.2.1 GO:0008901 ... P18188 9751716
    134 1fz1:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    135 1fz1:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    136 1fz1:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    137 1fz1:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    138 1fz3:A (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    139 1fz3:A (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    140 1fz3:B (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    141 1fz3:B (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    142 1fz4:A (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    143 1fz4:A (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    144 1fz4:B (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    145 1fz4:B (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    146 1fz6:A (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    147 1fz6:A (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    148 1fz6:B (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    149 1fz6:B (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    150 1fz7:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    151 1fz7:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    152 1fz7:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    153 1fz7:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    154 1fz8:A (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    155 1fz8:A (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    156 1fz8:B (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    157 1fz8:B (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    158 1fz9:A (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    159 1fz9:A (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    160 1fz9:B (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    161 1fz9:B (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    162 1fzh:A (2.6) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    163 1fzh:A (2.6) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    164 1fzh:B (2.6) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    165 1fzh:B (2.6) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    166 1fzi:A (3.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    167 1fzi:A (3.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    168 1fzi:B (3.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    169 1fzi:B (3.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    170 1gn2:A (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    171 1gn2:B (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    172 1gn2:C (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    173 1gn2:D (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    174 1gn2:E (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    175 1gn2:F (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    176 1gn2:G (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    177 1gn2:H (3.4) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 11747311
    178 1gn3:A (4.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    179 1gn3:B (4.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    180 1gn6:A (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    181 1gn6:B (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    182 1gn6:C (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    183 1gn6:D (2.9) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 8674528
    184 1gp5:A (2.2) BS04 FE 1.14.20.4 GO:0007033 ... Q96323 11796114
    185 1gup:A (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    186 1gup:B (1.8) BS05 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    187 1gup:C (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    188 1gup:D (1.8) BS04 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    189 1guq:A (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    190 1guq:B (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    191 1guq:C (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    192 1guq:D (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    193 1gv8:A (1.95) BS03 FE ? GO:0005576 ... P56410 11976488
    194 1gvg:A (1.54) BS01 FE 1.14.11.21 GO:0005506 ... Q05581 12062399
    195 1gy9:A (2.5) BS01 FE 1.14.11.17 GO:0000908 ... P37610 11955067
    196 1gy9:A (2.5) BS02 FE 1.14.11.17 GO:0000908 ... P37610 11955067
    197 1gy9:B (2.5) BS01 FE 1.14.11.17 GO:0000908 ... P37610 11955067
    198 1h43:A (2.2) BS02 FE 3.4.21.- GO:0005576 ... P02788 12450380
    199 1h44:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 12450380
    200 1h45:A (1.95) BS01 FE 3.4.21.- GO:0005576 ... P02788 12450380
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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