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BioLiP Library
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gu1:A (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    2 1gu1:B (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    3 1gu1:C (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    4 1gu1:D (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    5 1gu1:E (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    6 1gu1:F (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    7 1gu1:G (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    8 1gu1:H (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    9 1gu1:I (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    10 1gu1:J (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    11 1gu1:K (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    12 1gu1:L (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    13 1h0r:A (2.1) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 N/A MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    14 2c57:A (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 PDBbind: -logKd/Ki=3.43, Ki=370uM
    BindingDB: Kd=370000nM
    15 2c57:B (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 PDBbind: -logKd/Ki=3.43, Ki=370uM
    BindingDB: Kd=370000nM
    16 2c57:C (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    17 2c57:D (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    18 2c57:E (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    19 2c57:F (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    20 2c57:G (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    21 2c57:H (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    22 2c57:I (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    23 2c57:J (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    24 2c57:K (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    25 2c57:L (3.1) BS01 FA1 4.2.1.10 GO:0003855 ... Q48255 16480265 BindingDB: Kd=370000nM
    26 3n7a:A (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    27 3n7a:B (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    28 3n7a:C (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    29 3n7a:D (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    30 3n7a:E (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    31 3n7a:F (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    32 3n7a:G (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    33 3n7a:H (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    34 3n7a:I (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    35 3n7a:J (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    36 3n7a:K (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    37 3n7a:L (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    38 3n7a:M (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    39 3n7a:N (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    40 3n7a:O (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    41 3n7a:P (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    42 3n7a:Q (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    43 3n7a:R (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    44 3n7a:S (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    45 3n7a:T (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    46 3n7a:U (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    47 3n7a:V (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    48 3n7a:W (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    49 3n7a:X (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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