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BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a71:A (2.0) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 9649310
    2 1a71:B (2.0) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 9649310
    3 1p2s:A (2.45) BS03 ETF 3.6.5.2 GO:0003924 ... P01112 12842038
    4 1rjw:A (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    5 1rjw:B (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    6 1rjw:B (2.35) BS04 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    7 1rjw:B (2.35) BS05 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    8 1rjw:B (2.35) BS06 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    9 1rjw:C (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    10 1rjw:D (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    11 1rjw:D (2.35) BS04 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    12 1rjw:D (2.35) BS05 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    13 2fog:A (1.9) BS02 ETF 3.4.21.36 GO:0004252 ... P00772 16488429
    14 2fog:A (1.9) BS03 ETF 3.4.21.36 GO:0004252 ... P00772 16488429
    15 2fog:A (1.9) BS04 ETF 3.4.21.36 GO:0004252 ... P00772 16488429
    16 2foh:A (1.8) BS02 ETF 3.4.21.36 GO:0004252 ... P00772 16488429
    17 3ev4:A (1.93) BS01 ETF 4.6.1.18 GO:0003676 ... P61823 19291738
    18 3ev4:B (1.93) BS01 ETF 4.6.1.18 GO:0003676 ... P61823 19291738
    19 4dxh:A (1.12) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 22531044 MOAD: Ki=8.4uM
    20 4dxh:B (1.12) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 22531044 MOAD: Ki=8.4uM
    21 4nfs:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 24437493
    22 4nfs:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 24437493
    23 4w6z:A (2.4) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 25157460 MOAD: Ki=2.8mM
    24 4w6z:B (2.4) BS03 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 25157460 MOAD: Ki=2.8mM
    25 4w6z:C (2.4) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 25157460 MOAD: Ki=2.8mM
    26 4w6z:D (2.4) BS03 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 25157460 MOAD: Ki=2.8mM
    27 5env:A (3.0) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 26743849
    28 5env:B (3.0) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 26743849
    29 5kcz:A (1.14) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 28025168 MOAD: Ki=98uM
    30 5kcz:B (1.14) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 28025168 MOAD: Ki=98uM
    31 5nlj:B (1.53) BS03 ETF ? N/A P0CG47 29266436
    32 6oa7:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 31994873
    33 6oa7:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 31994873
    34 6owp:A (1.14) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 31994873
    35 6owp:B (1.14) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 31994873
    36 7kcb:A (2.77) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 33620215
    37 7kcb:B (2.77) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 33620215
    38 7kcb:C (2.77) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 33620215
    39 7kcb:D (2.77) BS04 ETF 1.1.1.1
    1.1.1.54
    1.1.1.78    		 GO:0000947 ... P00330 33620215
    40 7ua6:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    41 7ua6:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    42 7uc9:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    43 7uc9:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    44 7uca:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    45 7uca:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    46 7ucu:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    47 7ucu:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    48 7udd:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    49 7udd:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    50 7ude:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    51 7ude:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    52 8g2l:A (1.42) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    53 8g2l:B (1.42) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 N/A
    54 8oyi:C (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    55 8oyi:G (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    56 8oyi:K (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    57 8sqw:C (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    58 8sqw:G (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    59 8sqw:K (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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