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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 143 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2byq:A (3.4) BS01 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    2 2byq:A (3.4) BS02 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    3 2byq:B (3.4) BS01 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    4 2byq:C (3.4) BS01 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    5 2byq:C (3.4) BS02 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    6 2byq:D (3.4) BS01 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    7 2byq:D (3.4) BS02 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    8 2byq:E (3.4) BS01 EPJ ? GO:0004888 ... Q8WSF8 16193063 BindingDB: Ki=7.4nM
    9 3sq6:A (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    10 3sq6:A (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    11 3sq6:B (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    12 3sq6:B (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    13 3sq6:C (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    14 3sq6:C (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    15 3sq6:D (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    16 3sq6:D (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    17 3sq6:E (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    18 3sq6:E (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    19 3sq6:F (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    20 3sq6:F (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    21 3sq6:G (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    22 3sq6:G (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    23 3sq6:H (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    24 3sq6:H (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    25 3sq6:I (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    26 3sq6:I (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    27 3sq6:J (2.8) BS01 EPJ N/A GO:0004888 ... N/A 21909087
    28 3sq6:J (2.8) BS02 EPJ N/A GO:0004888 ... N/A 21909087
    29 5fjv:A (3.2) BS01 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    30 5fjv:A (3.2) BS02 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    31 5fjv:B (3.2) BS01 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    32 5fjv:B (3.2) BS02 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    33 5fjv:C (3.2) BS01 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    34 5fjv:C (3.2) BS02 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    35 5fjv:D (3.2) BS01 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    36 5fjv:D (3.2) BS02 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    37 5fjv:E (3.2) BS01 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    38 5fjv:E (3.2) BS02 EPJ ? GO:0004888 ... Q15822 27493220 BindingDB: Ki=10.2nM
    39 7koq:A (3.6) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    40 7koq:B (3.6) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    41 7koq:C (3.6) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    42 7koq:D (3.6) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    43 7koq:E (3.6) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    44 7koq:E (3.6) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    45 7kox:A (2.7) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    46 7kox:A (2.7) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    47 7kox:B (2.7) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    48 7kox:B (2.7) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    49 7kox:C (2.7) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    50 7kox:C (2.7) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    51 7kox:D (2.7) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    52 7kox:D (2.7) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    53 7kox:E (2.7) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    54 7kox:E (2.7) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    33735609
    55 8ut1:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    56 8ut1:A (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    57 8ut1:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    58 8ut1:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    59 8ut1:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    60 8ut1:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    61 8ut1:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    62 8ut1:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    63 8ut1:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    64 8ut1:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    65 8utb:A (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    66 8utb:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    67 8utb:B (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    68 8utb:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    69 8utb:C (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    70 8utb:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    71 8utb:D (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    72 8utb:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    73 8utb:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    74 8utb:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    75 8uzj:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    76 8uzj:A (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    77 8uzj:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    78 8uzj:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    79 8uzj:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    80 8uzj:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    81 8uzj:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    82 8uzj:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    83 8uzj:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    84 8uzj:E (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    85 8v80:A (2.34) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    86 8v80:A (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    87 8v80:B (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    88 8v80:B (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    89 8v80:C (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    90 8v80:C (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    91 8v80:D (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    92 8v80:D (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    93 8v80:E (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    94 8v80:E (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    95 8v82:A (2.61) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    96 8v82:A (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    97 8v82:B (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    98 8v82:B (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    99 8v82:C (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    100 8v82:C (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    101 8v82:D (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    102 8v82:D (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    103 8v82:E (2.61) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    104 8v82:E (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    105 8v88:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    106 8v88:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    107 8v88:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    108 8v88:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    109 8v88:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    110 8v88:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    111 8v88:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    112 8v88:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    113 8v88:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    114 8v88:E (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    115 8v8a:A (2.19) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    116 8v8a:A (2.19) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    117 8v8a:B (2.19) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    118 8v8a:B (2.19) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    119 8v8a:C (2.19) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    120 8v8a:C (2.19) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    121 8v8a:D (2.19) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    122 8v8a:D (2.19) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    123 8v8a:E (2.19) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    124 8v8a:E (2.19) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    125 8v8c:A (3.29) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    126 8v8c:A (3.29) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    127 8v8c:B (3.29) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    128 8v8c:B (3.29) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    129 8v8c:C (3.29) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    130 8v8c:C (3.29) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    131 8v8c:D (3.29) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    132 8v8c:D (3.29) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    133 8v8c:E (3.29) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    134 8v8c:E (3.29) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    135 8v8d:A (3.31) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    136 8v8d:A (3.31) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    137 8v8d:B (3.31) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    138 8v8d:B (3.31) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    139 8v8d:C (3.31) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    140 8v8d:C (3.31) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    141 8v8d:D (3.31) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    142 8v8d:E (3.31) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    143 8v8d:E (3.31) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417