Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g2n:A (1.65) BS01 EPH ? GO:0003677 ... Q7SIF6 11053444
    2 1nek:C (2.6) BS03 EPH ? GO:0005886 ... P69054 12560550
    3 1nen:C (2.9) BS04 EPH ? GO:0005886 ... P69054 12560550
    4 1r1k:A (2.9) BS01 EPH ? GO:0003677 ... Q7SIF6 14595375
    5 1r20:A (3.0) BS01 EPH ? GO:0003677 ... Q7SIF6 14595375
    6 1yuc:A (1.9) BS02 EPH ? GO:0003677 ... O00482 15723037
    7 1yuc:A (1.9) BS03 EPH ? GO:0003677 ... O00482 15723037
    8 1yuc:B (1.9) BS02 EPH ? GO:0003677 ... O00482 15723037
    9 1zoy:D (2.4) BS02 EPH ? GO:0005740 ... A5GZW8 15989954
    10 2r40:A (2.402) BS01 EPH ? GO:0003677 ... Q7SIF6 17848566
    11 3abv:D (3.24) BS02 EPH ? GO:0005740 ... A5GZW8 26198225
    12 3ae1:D (3.139) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    13 3ae2:D (3.1) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    14 3ae3:D (3.35) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    15 3ae4:D (2.91) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    16 3ae5:D (3.41) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    17 3ae6:D (3.4) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    18 3ae8:D (3.4) BS03 EPH ? GO:0005740 ... A5GZW8 N/A
    19 3ae9:D (3.31) BS02 EPH ? GO:0005740 ... A5GZW8 26198225
    20 3aea:D (3.39) BS02 EPH ? GO:0005740 ... A5GZW8 26198225
    21 3aeb:D (3.0) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    22 3aec:D (3.61) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    23 3aed:D (3.52) BS03 EPH ? GO:0005740 ... A5GZW8 N/A
    24 3aef:D (2.8) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    25 3ixp:A (2.85) BS01 EPH ? GO:0003677 ... Q7SIF6 N/A
    26 3vr8:C (2.81) BS03 EPH ? GO:0005515 ... P92506 22577165
    27 3vr8:D (2.81) BS03 EPH ? GO:0005515 ... P92507 22577165
    28 3vr8:H (2.81) BS03 EPH ? GO:0005515 ... P92507 22577165
    29 3vr9:C (3.01) BS03 EPH ? GO:0005515 ... P92506 N/A
    30 3vr9:D (3.01) BS03 EPH ? GO:0005515 ... P92507 N/A
    31 3vr9:G (3.01) BS03 EPH ? GO:0005515 ... P92506 N/A
    32 3vr9:H (3.01) BS03 EPH ? GO:0005515 ... P92507 N/A
    33 3vra:D (3.44) BS02 EPH ? GO:0005515 ... P92507 N/A
    34 3vra:G (3.44) BS03 EPH ? GO:0005515 ... P92506 N/A
    35 3vra:H (3.44) BS02 EPH ? GO:0005515 ... P92507 N/A
    36 3vrb:C (2.91) BS03 EPH ? GO:0005515 ... P92506 22577165
    37 3vrb:D (2.91) BS03 EPH ? GO:0005515 ... P92507 22577165
    38 3vrb:G (2.91) BS03 EPH ? GO:0005515 ... P92506 22577165
    39 3vrb:H (2.91) BS03 EPH ? GO:0005515 ... P92507 22577165
    40 4dor:A (1.9) BS02 EPH ? GO:0003677 ... O00482 22504882
    41 4dor:B (1.9) BS02 EPH ? GO:0003677 ... O00482 22504882
    42 4oni:A (1.8) BS02 EPH ? GO:0003677 ... O00482 N/A
    43 4ple:A (1.752) BS02 EPH ? GO:0003677 ... O00482 26553876
    44 4ple:C (1.752) BS03 EPH ? GO:0003677 ... O00482 26553876
    45 4ple:E (1.752) BS03 EPH ? GO:0003677 ... O00482 26553876
    46 4ple:G (1.752) BS02 EPH ? GO:0003677 ... O00482 26553876
    47 4umm:F (11.6) BS01 EPH ? GO:0003677 ... Q7SIF6 24942373
    48 4ysx:C (2.25) BS03 EPH ? GO:0005515 ... P92506 26198225
    49 4ysx:D (2.25) BS03 EPH ? GO:0005515 ... P92507 26198225
    50 4ysx:G (2.25) BS03 EPH ? GO:0005515 ... P92506 26198225
    51 4ysx:H (2.25) BS03 EPH ? GO:0005515 ... P92507 26198225
    52 4ysy:C (3.1) BS03 EPH ? GO:0005515 ... P92506 26198225
    53 4ysy:D (3.1) BS03 EPH ? GO:0005515 ... P92507 26198225
    54 4ysy:G (3.1) BS03 EPH ? GO:0005515 ... P92506 26198225
    55 4ysy:H (3.1) BS03 EPH ? GO:0005515 ... P92507 26198225
    56 4ysz:D (3.3) BS03 EPH ? GO:0005515 ... P92507 26198225
    57 4ysz:H (3.3) BS03 EPH ? GO:0005515 ... P92507 26198225
    58 4ytm:C (3.4) BS03 EPH ? GO:0005515 ... P92506 26198225
    59 4ytm:D (3.4) BS03 EPH ? GO:0005515 ... P92507 26198225
    60 5c2t:D (2.75) BS03 EPH ? GO:0005515 ... P92507 26198225
    61 5c2t:H (2.75) BS02 EPH ? GO:0005515 ... P92507 26198225
    62 5c3j:C (2.8) BS03 EPH ? GO:0005515 ... P92506 N/A
    63 5c3j:D (2.8) BS02 EPH ? GO:0005515 ... P92507 N/A
    64 5c3j:H (2.8) BS03 EPH ? GO:0005515 ... P92507 N/A
    65 5z9o:A (2.7) BS02 EPH 2.1.1.79 GO:0006629 ... Q5FJM0 30828715
    66 5z9o:B (2.7) BS02 EPH 2.1.1.79 GO:0006629 ... Q5FJM0 30828715
    67 7bju:A (2.85) BS01 EPH ? GO:0003677 ... A0A2A4K9Z3 33746550
    68 7bjv:A (3.05) BS01 EPH ? GO:0003677 ... A0A2A4K9Z3 33746550
    69 7bjv:B (3.05) BS01 EPH ? GO:0003677 ... A0A2A4K9Z3 33746550
    70 7bjv:C (3.05) BS01 EPH ? GO:0003677 ... A0A2A4K9Z3 33746550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218