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BioLiP
Download all results in tab-seperated text for 79 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bht:A (2.0) BS03 EPE ? N/A P14210 9817840
    2 1bht:B (2.0) BS02 EPE ? N/A P14210 9817840
    3 1d1p:A (2.2) BS01 EPE 3.1.3.2
    3.1.3.48    		 GO:0003993 ... P40347 10684639 PDBbind: -logKd/Ki=3.60, Ki=0.25mM
    4 1d1p:B (2.2) BS01 EPE 3.1.3.2
    3.1.3.48    		 GO:0003993 ... P40347 10684639
    5 1g5c:A (2.1) BS02 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    6 1g5c:B (2.1) BS01 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    7 1g5c:C (2.1) BS02 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    8 1g5c:D (2.1) BS01 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    9 1g5c:E (2.1) BS02 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    10 1g5c:F (2.1) BS01 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    11 1gyx:B (1.35) BS01 EPE 5.3.2.- GO:0005737 ... P31992 12356301
    12 1h0b:A (1.8) BS01 EPE 3.2.1.4 GO:0000272 ... O33897 12095262
    13 1h0b:B (1.8) BS01 EPE 3.2.1.4 GO:0000272 ... O33897 12095262
    14 1hjs:A (1.87) BS01 EPE 3.2.1.89 GO:0004553 ... P83692 12761390
    15 1mlv:A (2.6) BS02 EPE 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 12372303
    16 1mlv:B (2.6) BS02 EPE 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 12372303
    17 1mlv:C (2.6) BS02 EPE 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 12372303
    18 1p7k:A (1.75) BS02 EPE ? N/A I6L978 15340914
    19 1p7k:L (1.75) BS01 EPE ? N/A I6L978 15340914
    20 1pgt:A (1.8) BS02 EPE 2.5.1.18 GO:0000302 ... P09211 9245401
    21 1pgt:B (1.8) BS02 EPE 2.5.1.18 GO:0000302 ... P09211 9245401
    22 1yiv:A (2.1) BS01 EPE ? GO:0005504 ... P0C6G6 16041071
    23 2pgt:A (1.9) BS02 EPE 2.5.1.18 GO:0000302 ... P09211 9245401
    24 2pgt:B (1.9) BS02 EPE 2.5.1.18 GO:0000302 ... P09211 9245401
    25 3buv:A (1.35) BS02 EPE 1.3.1.3 GO:0004032 ... P51857 18407998
    26 3dyb:A (1.32) BS04 EPE 3.4.21.64 GO:0004252 ... P06873 19255463
    27 3lmv:A (2.833) BS01 EPE 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    28 3lmv:B (2.833) BS01 EPE 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    29 3lmv:B (2.833) BS02 EPE 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    30 3lmv:C (2.833) BS01 EPE 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    31 3lmv:C (2.833) BS02 EPE 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    32 3lmv:D (2.833) BS01 EPE 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    33 3lmv:D (2.833) BS02 EPE 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    34 3obb:A (2.2) BS01 EPE 1.1.1.387 GO:0000166 ... Q9I5I6 22128181
    35 3qhx:A (1.65) BS01 EPE 2.5.1.48 GO:0003962 ... A0PKT3 21904066
    36 3qhx:B (1.65) BS01 EPE 2.5.1.48 GO:0003962 ... A0PKT3 21904066
    37 3ujm:A (2.741) BS01 EPE ? N/A Q9VFT4 22414690
    38 3ujm:B (2.741) BS01 EPE ? N/A Q9VFT4 22414690
    39 3vif:A (1.0) BS02 EPE 3.2.1.21 GO:0004553 ... Q8T0W7 22751668
    40 3vig:A (0.99) BS02 EPE 3.2.1.21 GO:0004553 ... Q8T0W7 22751668
    41 3vog:A (1.45) BS01 EPE 3.2.1.- GO:0004553 ... B7X9Z0 22429290
    42 4je5:A (1.909) BS02 EPE 2.6.1.39
    2.6.1.57    		 GO:0005737 ... P53090 23893908
    43 4je5:A (1.909) BS03 EPE 2.6.1.39
    2.6.1.57    		 GO:0005737 ... P53090 23893908
    44 4je5:A (1.909) BS04 EPE 2.6.1.39
    2.6.1.57    		 GO:0005737 ... P53090 23893908
    45 4je5:B (1.909) BS01 EPE 2.6.1.39
    2.6.1.57    		 GO:0005737 ... P53090 23893908
    46 4je5:C (1.909) BS02 EPE 2.6.1.39
    2.6.1.57    		 GO:0005737 ... P53090 23893908
    47 4je5:C (1.909) BS03 EPE 2.6.1.39
    2.6.1.57    		 GO:0005737 ... P53090 23893908
    48 4je5:D (1.909) BS01 EPE 2.6.1.39
    2.6.1.57    		 GO:0005737 ... P53090 23893908
    49 4m3s:A (1.3) BS01 EPE ? GO:0016747 ... Q9HV14 25044180
    50 4uzi:A (2.1) BS04 EPE 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606
    51 5ecd:A (1.75) BS01 EPE 3.1.-.- GO:0000287 ... O06662 26833558
    52 5ecd:B (1.75) BS01 EPE 3.1.-.- GO:0000287 ... O06662 26833558
    53 5oxl:A (2.66) BS03 EPE ? GO:0005886 ... Q5M4H8 29429879
    54 5oxq:A (2.195) BS04 EPE ? GO:0005886 ... Q5M4H8 29429879
    55 5oxq:A (2.195) BS05 EPE ? GO:0005886 ... Q5M4H8 29429879
    56 6eia:A (2.0) BS04 EPE ? GO:0005886 ... Q5M4H8 29429879
    57 6eia:A (2.0) BS05 EPE ? GO:0005886 ... Q5M4H8 29429879
    58 6kmm:A (1.93) BS02 EPE 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    59 6kmm:C (1.93) BS03 EPE 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    60 6kmm:D (1.93) BS03 EPE 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    61 6kmm:D (1.93) BS04 EPE 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    62 6kmm:F (1.93) BS02 EPE 1.11.1.-
    4.98.1.1    		 GO:0004325 ... P39597 32971035
    63 6oex:A (2.1) BS02 EPE 1.8.1.12 GO:0000166 ... Q389T8 31407832
    64 6oex:B (2.1) BS02 EPE 1.8.1.12 GO:0000166 ... Q389T8 31407832
    65 6oey:A (2.1) BS02 EPE 1.8.1.12 GO:0000166 ... Q389T8 31407832
    66 6oey:B (2.1) BS02 EPE 1.8.1.12 GO:0000166 ... Q389T8 31407832
    67 6oez:A (2.5) BS02 EPE 1.8.1.12 GO:0000166 ... Q389T8 31407832
    68 6oez:B (2.5) BS02 EPE 1.8.1.12 GO:0000166 ... Q389T8 31407832
    69 7ov8:A (2.3) BS01 EPE 3.1.3.2 GO:0003993 ... P09889 34331400
    70 7ov8:A (2.3) BS02 EPE 3.1.3.2 GO:0003993 ... P09889 34331400
    71 7ov8:A (2.3) BS03 EPE 3.1.3.2 GO:0003993 ... P09889 34331400
    72 8d2y:A (1.22) BS01 EPE 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    73 8d4i:A (1.32) BS02 EPE 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    74 8d4i:C (1.32) BS02 EPE 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    75 8jff:A (2.89) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    76 8jff:A (2.89) BS02 EPE ? GO:0000976 ... A0A454A0X5 37805153
    77 8jff:B (2.89) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    78 8jfv:A (3.05) BS02 EPE ? GO:0000976 ... A0A454A0X5 37805153
    79 8jfv:B (3.05) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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