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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1w1s:A (2.0) BS02 EMU 1.5.99.12 GO:0003824 ... Q9T0N8 15321719
    2 3t4k:A (1.77) BS01 EMU 2.7.13.3
    3.1.3.16    		 N/A Q9C5U0 21964459
    3 3t4k:B (1.77) BS01 EMU 2.7.13.3
    3.1.3.16    		 N/A Q9C5U0 21964459
    4 4jhi:A (2.6) BS01 EMU ? GO:0004864 ... P93330 24311578
    5 4qp1:A (2.7) BS01 EMU 2.7.11.24 GO:0000165 ... P28482 26338362 PDBbind: -logKd/Ki=3.61, Kd=247uM
    6 4qp1:B (2.7) BS01 EMU 2.7.11.24 GO:0000165 ... P28482 26338362
    7 4yxs:A (2.11) BS02 EMU 2.7.11.11 GO:0001669 ... P00517 25877959
    8 8irn:A (2.7) BS01 EMU ? GO:0005345 ... Q9SRK7 38172575
    9 8irn:B (2.7) BS01 EMU ? GO:0005345 ... Q9SRK7 38172575
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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