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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1f0q:A (2.63) BS01 EMO 2.7.11.1 GO:0004672 ... P28523 10882732 PDBbind: -logKd/Ki=6.00, IC50=1uM
    BindingDB: Ki=1850nM
    2 2rh4:A (2.3) BS02 EMO 1.3.1.- GO:0008202 ... P16544 18205400 MOAD: Ki=15uM
    3 2rhc:A (2.1) BS02 EMO 1.3.1.- GO:0008202 ... P16544 18205400
    4 2rhr:A (2.5) BS02 EMO 1.3.1.- GO:0008202 ... P16544 18205400
    5 2rhr:A (2.5) BS03 EMO 1.3.1.- GO:0008202 ... P16544 18205400
    6 3bqc:A (1.5) BS01 EMO 2.7.11.1 GO:0004672 ... P68400 18242640 MOAD: ic50~2uM
    PDBbind: -logKd/Ki=5.73, Ki=1.85uM
    BindingDB: Ki=1850nM, IC50=580nM
    7 3c13:A (1.95) BS01 EMO 2.7.11.1 GO:0004672 ... P68400 18242640 BindingDB: Ki=1850nM, IC50=580nM
    8 3csd:A (2.29) BS02 EMO 1.3.1.- GO:0008202 ... P16544 N/A
    9 3csd:A (2.29) BS03 EMO 1.3.1.- GO:0008202 ... P16544 N/A
    10 3csd:B (2.29) BS02 EMO 1.3.1.- GO:0008202 ... P16544 N/A
    11 3csd:B (2.29) BS03 EMO 1.3.1.- GO:0008202 ... P16544 N/A
    12 3ed0:A (2.3) BS01 EMO 4.2.1.59 GO:0005737 ... Q5G940 19433000 MOAD: Kd=0.45uM
    PDBbind: -logKd/Ki=6.35, Kd=0.45uM
    13 3ed0:B (2.3) BS01 EMO 4.2.1.59 GO:0005737 ... Q5G940 19433000 PDBbind: -logKd/Ki=6.35, Kd=0.45uM
    14 3ed0:C (2.3) BS01 EMO 4.2.1.59 GO:0005737 ... Q5G940 19433000 MOAD: Kd=0.45uM
    15 3pzh:A (1.919) BS01 EMO 2.7.11.1 GO:0004672 ... P28523 N/A BindingDB: Ki=1850nM
    16 3q9w:A (1.7) BS01 EMO 2.7.11.1 GO:0004672 ... P68400 N/A BindingDB: Ki=1850nM, IC50=580nM
    17 3q9x:A (2.2) BS01 EMO 2.7.11.1 GO:0004672 ... P68400 N/A BindingDB: Ki=1850nM, IC50=580nM
    18 3q9x:B (2.2) BS01 EMO 2.7.11.1 GO:0004672 ... P68400 N/A BindingDB: Ki=1850nM, IC50=580nM
    19 3ri3:A (2.292) BS02 EMO 1.3.1.- GO:0008202 ... P16544 21506596
    20 3ri3:A (2.292) BS03 EMO 1.3.1.- GO:0008202 ... P16544 21506596
    21 3ri3:B (2.292) BS02 EMO 1.3.1.- GO:0008202 ... P16544 21506596
    22 3ri3:B (2.292) BS03 EMO 1.3.1.- GO:0008202 ... P16544 21506596
    23 7wh9:A (2.803) BS01 EMO 2.1.1.283 GO:0008168 ... Q0CCY5 35475366
    24 7wh9:B (2.803) BS01 EMO 2.1.1.283 GO:0008168 ... Q0CCY5 35475366
    25 7wh9:C (2.803) BS01 EMO 2.1.1.283 GO:0008168 ... Q0CCY5 35475366
    26 7yb2:A (1.85) BS01 EMO ? GO:0000166 ... A0A2G5I2X5 36681664
    27 7yb2:B (1.85) BS01 EMO ? GO:0000166 ... A0A2G5I2X5 36681664
    28 7yb2:C (1.85) BS01 EMO ? GO:0000166 ... A0A2G5I2X5 36681664
    29 7yb2:D (1.85) BS01 EMO ? GO:0000166 ... A0A2G5I2X5 36681664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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