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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hmr:A (1.4) BS01 ELA ? GO:0005515 ... P05413 7922029 MOAD: Kd=0.28uM
    PDBbind: -logKd/Ki=6.55, Kd=0.28uM
    2 3lup:A (2.65) BS01 ELA ? N/A D4AEP8 N/A
    3 4jiv:C (1.903) BS01 ELA 3.2.1.17 N/A P16009 23925114
    4 4jj2:A (1.28) BS01 ELA 3.2.1.17 N/A P16009 26295253
    5 4ku0:A (1.15) BS01 ELA 3.2.1.17 N/A P16009 N/A
    6 4ku0:C (1.15) BS01 ELA 3.2.1.17 N/A P16009 N/A
    7 4osd:A (1.96) BS01 ELA 3.2.1.17 N/A P16009 26295253
    8 4osd:B (1.96) BS01 ELA 3.2.1.17 N/A P16009 26295253
    9 4osd:G (1.96) BS01 ELA 3.2.1.17 N/A P16009 26295253
    10 4osd:J (1.96) BS01 ELA 3.2.1.17 N/A P16009 26295253
    11 6p1z:A (2.099) BS01 ELA 3.2.1.17 N/A P16009 N/A
    12 6p1z:E (2.099) BS01 ELA 3.2.1.17 N/A P16009 N/A
    13 6p1z:F (2.099) BS01 ELA 3.2.1.17 N/A P16009 N/A
    14 6p1z:G (2.099) BS01 ELA 3.2.1.17 N/A P16009 N/A
    15 6p20:A (1.749) BS01 ELA 3.2.1.17 N/A P16009
    Q8SCZ8    		 N/A
    16 6p2a:A (1.9) BS02 ELA 3.2.1.17 N/A G9IA38
    P16009    		 N/A
    17 6p2a:C (1.9) BS02 ELA 3.2.1.17 N/A G9IA38
    P16009    		 N/A
    18 7e7b:A (2.6) BS01 ELA ? GO:0005201 ... P02452
    P0DTC2    		 33692215
    19 7e7b:B (2.6) BS01 ELA ? GO:0005201 ... P02452
    P0DTC2    		 33692215
    20 7e7b:C (2.6) BS01 ELA ? GO:0005201 ... P02452
    P0DTC2    		 33692215
    21 7e7d:A (3.2) BS01 ELA ? GO:0005201 ... P02452
    P0DTC2    		 33692215
    22 7e7d:B (3.2) BS01 ELA ? GO:0005201 ... P02452
    P0DTC2    		 33692215
    23 7e7d:B (3.2) BS02 ELA ? GO:0005201 ... P02452
    P0DTC2    		 33692215
    24 7e7d:C (3.2) BS01 ELA ? GO:0005201 ... P02452
    P0DTC2    		 33692215
    25 7fdt:A (0.86) BS01 ELA ? GO:0005515 ... P05413 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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