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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1nfz:A (1.97) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 12540835
    2 1nfz:B (1.97) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 12540835
    3 1ow2:A (2.0) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 14696183
    4 1ow2:B (2.0) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 14696183
    5 1ppw:A (2.21) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 15643873 MOAD: ic50~50uM
    PDBbind: -logKd/Ki=4.30, IC50=50uM
    6 1ppw:B (2.21) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 15643873 MOAD: ic50~50uM
    7 2b2k:A (1.97) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 16617181
    8 2b2k:B (1.97) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 16617181
    9 2g73:A (1.97) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 16617181
    10 2g73:B (1.97) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 16617181
    11 3ke8:A (1.7) BS02 EIP 1.17.7.4 GO:0005829 ... P62623 20080550
    12 3ke8:B (1.7) BS02 EIP 1.17.7.4 GO:0005829 ... P62623 20080550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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