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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jp3:A (1.8) BS01 EGC 2.5.1.31 GO:0000287 ... P60472 11581264
    2 2w22:A (2.2) BS03 EGC 3.1.1.3 GO:0004806 ... Q59260 19056729
    3 2w22:A (2.2) BS04 EGC 3.1.1.3 GO:0004806 ... Q59260 19056729
    4 2yk4:A (1.94) BS01 EGC 2.4.3.6 N/A P72097 21880735
    5 4p42:A (2.44) BS01 EGC ? GO:0006869 ... A0FGR8 24847877
    6 4p42:B (2.44) BS01 EGC ? GO:0006869 ... A0FGR8 24847877
    7 5z89:A (1.42) BS01 EGC ? GO:0046872 ... A0A0M3PNA2 30021834 PDBbind: -logKd/Ki=6.71, Kd=195nM
    8 5z95:A (1.2) BS01 EGC ? GO:0046872 ... A0A0M3PNA2 30021834 PDBbind: -logKd/Ki=6.55, Kd=284nM
    9 7c8l:A (1.45) BS01 EGC ? GO:0046872 ... A0A0M3PNA2 34850204
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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