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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1nnf:A (1.1) BS02 EDT ? GO:0006826 ... P35755 12533539
    2 1zlq:A (1.8) BS01 EDT 3.6.3.24 GO:0005515 ... P33590 16011372
    3 1zlq:B (1.8) BS01 EDT 3.6.3.24 GO:0005515 ... P33590 16011372
    4 2axn:A (2.1) BS02 EDT 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 16316985
    5 3l7k:A (3.1) BS01 EDT 2.7.8.12 GO:0005886 ... Q5HLM5 20400947
    6 3l7k:C (3.1) BS01 EDT 2.7.8.12 GO:0005886 ... Q5HLM5 20400947
    7 3l7k:D (3.1) BS02 EDT 2.7.8.12 GO:0005886 ... Q5HLM5 20400947
    8 3l7m:A (2.85) BS01 EDT 2.7.8.12 GO:0005886 ... Q5HLM5 20400947
    9 3l7m:B (2.85) BS01 EDT 2.7.8.12 GO:0005886 ... Q5HLM5 20400947
    10 3l7m:C (2.85) BS03 EDT 2.7.8.12 GO:0005886 ... Q5HLM5 20400947
    11 3l7m:D (2.85) BS03 EDT 2.7.8.12 GO:0005886 ... Q5HLM5 20400947
    12 3rnj:A (1.5) BS01 EDT ? N/A Q9UQB8 N/A
    13 3t8n:D (1.47) BS01 EDT 5.3.3.1 GO:0004769 ... P07445 22053826
    14 3t8n:F (1.47) BS01 EDT 5.3.3.1 GO:0004769 ... P07445 22053826
    15 3wfa:A (2.0) BS01 EDT 3.2.1.3 GO:0000272 ... G8JZS4 N/A
    16 3wfa:A (2.0) BS02 EDT 3.2.1.3 GO:0000272 ... G8JZS4 N/A
    17 3wfa:B (2.0) BS01 EDT 3.2.1.3 GO:0000272 ... G8JZS4 N/A
    18 3wfa:B (2.0) BS02 EDT 3.2.1.3 GO:0000272 ... G8JZS4 N/A
    19 4oes:A (1.951) BS01 EDT ? GO:0015675 ... Q9AL82 25199691
    20 5jhd:E (2.46) BS02 EDT N/A N/A N/A 28250417
    21 5jhd:G (2.46) BS01 EDT ? GO:0000139 ... P61769 28250417
    22 5jhd:J (2.46) BS02 EDT N/A N/A N/A 28250417
    23 5l8d:A (1.8) BS01 EDT ? GO:0005515 ... P33590 28289745
    24 5mwu:A (1.8) BS01 EDT ? GO:0005515 ... P33590 N/A
    25 5uig:A (3.5) BS01 EDT ? GO:0001609 ... P0ABE7
    P29274    		 28167788
    26 5uwc:G (2.4) BS01 EDT ? GO:0004896 ... P26951 29374162
    27 6btx:A (3.2) BS02 EDT ? GO:0005381 ... Q6MLJ0 30082682
    28 6eid:A (2.39) BS01 EDT ? GO:0016020 ... Q8RUT8 29170206
    29 6r4q:A (1.9) BS01 EDT ? GO:0005515 ... P33590 N/A
    30 6uxe:B (1.57) BS01 EDT ? GO:0005515 ... Q9HD34 N/A
    31 6w1d:B (1.795) BS01 EDT ? GO:0005515 ... Q9HD34 N/A
    32 6wi2:B (1.95) BS01 EDT ? GO:0005515 ... Q9HD34 N/A
    33 6wih:B (1.9) BS01 EDT ? GO:0005515 ... Q9HD34 N/A
    34 6xi3:AAA (2.0) BS05 EDT N/A N/A N/A 32984811
    35 7jja:A (1.01) BS01 EDT ? GO:0008270 ... Q8CWN2 33531394
    36 7rtk:B (2.5) BS01 EDT ? GO:0005515 ... Q9HD34 N/A
    37 8hs7:A (2.0) BS01 EDT ? GO:0005789 ... P40075 N/A
    38 8tvt:B (2.0) BS01 EDT N/A N/A Q9HD34 N/A
    39 9eml:A (2.4) BS03 EDT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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