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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3mg1:A (1.649) BS01 ECH ? GO:0005515 ... P74102 20368334
    2 3mg1:B (1.649) BS01 ECH ? GO:0005515 ... P74102 20368334
    3 3mg2:A (2.653) BS01 ECH ? GO:0005515 ... P74102 20368334
    4 3mg2:B (2.653) BS01 ECH ? GO:0005515 ... P74102 20368334
    5 3mg3:A (1.702) BS01 ECH ? GO:0005515 ... P74102 20368334
    6 3mg3:B (1.702) BS01 ECH ? GO:0005515 ... P74102 20368334
    7 5oy0:2 (2.501) BS47 ECH 1.97.1.12 GO:0000287 ... P29255 29414678
    8 5oy0:B (2.501) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 29414678
    9 5oy0:M (2.501) BS03 ECH ? GO:0009522 ... P72986 29414678
    10 5oy0:a (2.501) BS49 ECH 1.97.1.12 GO:0000287 ... P29254 29414678
    11 5oy0:b (2.501) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 29414678
    12 5oy0:l (2.501) BS05 ECH ? GO:0005886 ... P37277 29414678
    13 5oy0:m (2.501) BS03 ECH ? GO:0009522 ... P72986 29414678
    14 5tux:A (1.5) BS01 ECH ? GO:0005515 ... P74102 28559328
    15 6hqb:B (4.0) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 30662446
    16 6hqb:M (4.0) BS02 ECH ? GO:0009522 ... P72986 30662446
    17 6t6k:A (1.37) BS01 ECH ? GO:0005515 ... P74102 33972665
    18 6t6m:A (1.49) BS01 ECH ? GO:0005515 ... P74102 33972665
    19 6t6o:A (1.4) BS01 ECH ? GO:0005515 ... P74102 33972665
    20 6tcl:B (3.2) BS42 ECH 1.97.1.12 GO:0000287 ... P58565 32170279
    21 6tcl:B1 (3.2) BS43 ECH 1.97.1.12 GO:0000287 ... P58565 32170279
    22 6tcl:B2 (3.2) BS43 ECH 1.97.1.12 GO:0000287 ... P58565 32170279
    23 6tcl:BB (3.2) BS41 ECH 1.97.1.12 GO:0000287 ... P58565 32170279
    24 6zzx:B (2.7) BS50 ECH 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    25 6zzx:M (2.7) BS03 ECH ? GO:0009507 ... W8SU98 34462576
    26 6zzy:B (3.16) BS50 ECH 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    27 6zzy:M (3.16) BS03 ECH ? GO:0009507 ... W8SU98 34462576
    28 7a4p:M (4.2) BS02 ECH ? GO:0009507 ... W8SU98 34462576
    29 7o1v:B (4.31) BS48 ECH 1.97.1.12 GO:0000287 ... P29255 34472838
    30 7o1v:M (4.31) BS02 ECH ? GO:0009522 ... P72986 34472838
    31 7qd0:A (1.7) BS02 ECH ? GO:0009579 ... A0A1J1JHR9 35752265
    32 7qd1:A (1.71) BS01 ECH ? GO:0009579 ... A0A1J1JHR9 35752265
    33 7qd1:C (1.71) BS01 ECH ? GO:0009579 ... A0A1J1JHR9 35752265
    34 7r0w:A (2.8) BS04 ECH ? GO:0009055 ... Q57038 35726684
    35 7r0w:F (2.8) BS02 ECH ? GO:0009055 ... P74810 35726684
    36 7r0w:G (2.8) BS01 ECH ? GO:0009512 ... P74149 35726684
    37 7r0w:I (2.8) BS05 ECH ? GO:0009055 ... Q57038 35726684
    38 7r0w:N (2.8) BS02 ECH ? GO:0009055 ... P74810 35726684
    39 7r0w:O (2.8) BS01 ECH ? GO:0009512 ... P74149 35726684
    40 7umh:B (2.6) BS50 ECH 1.97.1.12 GO:0000287 ... P29255 37532717
    41 7umh:B (2.6) BS53 ECH 1.97.1.12 GO:0000287 ... P29255 37532717
    42 7umh:G (2.6) BS42 ECH 1.97.1.12 GO:0000287 ... P29255 37532717
    43 7umh:G (2.6) BS52 ECH 1.97.1.12 GO:0000287 ... P29255 37532717
    44 7umh:L (2.6) BS04 ECH ? GO:0005886 ... P37277 37532717
    45 7umh:M (2.6) BS02 ECH ? GO:0009522 ... P72986 37532717
    46 7umh:U (2.6) BS05 ECH ? GO:0005886 ... P37277 37532717
    47 7umh:V (2.6) BS02 ECH ? GO:0009522 ... P72986 37532717
    48 7umh:b (2.6) BS50 ECH 1.97.1.12 GO:0000287 ... P29255 37532717
    49 7umh:b (2.6) BS53 ECH 1.97.1.12 GO:0000287 ... P29255 37532717
    50 7umh:l (2.6) BS07 ECH ? GO:0005886 ... P37277 37532717
    51 7umh:m (2.6) BS02 ECH ? GO:0009522 ... P72986 37532717
    52 7zxv:A (1.8) BS01 ECH ? GO:0005515 ... P74102 36776742
    53 7zxy:A (3.15) BS02 ECH ? GO:0009055 ... Q57038 35726684
    54 7zxy:F (3.15) BS02 ECH ? GO:0009055 ... P74810 35726684
    55 7zxy:G (3.15) BS01 ECH ? GO:0009512 ... P74149 35726684
    56 7zxy:I (3.15) BS02 ECH ? GO:0009055 ... Q57038 35726684
    57 7zxy:N (3.15) BS02 ECH ? GO:0009055 ... P74810 35726684
    58 7zxy:O (3.15) BS01 ECH ? GO:0009512 ... P74149 35726684
    59 8a0h:A (1.73) BS01 ECH ? GO:0009579 ... U5QHX0 36165868
    60 8am5:b (3.1) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 37542031
    61 8am5:m (3.1) BS02 ECH ? GO:0009522 ... P72986 37542031
    62 8asl:b (3.15) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 37542031
    63 8asl:m (3.15) BS02 ECH ? GO:0009522 ... P72986 37542031
    64 8asp:b (2.9) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 37542031
    65 8asp:m (2.9) BS02 ECH ? GO:0009522 ... P72986 37542031
    66 8pyh:A (2.2) BS01 ECH ? GO:0009579 ... K9VSN3 37939760
    67 8pyh:B (2.2) BS01 ECH ? GO:0009579 ... K9VSN3 37939760
    68 8pzk:A (1.8) BS01 ECH ? GO:0009579 ... K9XH36 37939760

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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