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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5n3l:A (1.38) BS01 E5E 2.7.11.11 GO:0000287 ... P25321 N/A
    2 7bu6:A (2.7) BS03 E5E 3.2.1.17 GO:0003796 ... D9IEF7
    P08588    		 33093660
    3 7ej0:R (3.2) BS01 E5E ? GO:0001819 ... P08913 35245122
    4 7ymh:A (3.52) BS01 E5E ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P35348    		 37339967
    5 8eem:A (1.56) BS02 E5E N/A GO:0016491 ... N/A 36662673
    6 8eem:B (1.56) BS02 E5E N/A GO:0016491 ... N/A 36662673
    7 8jsx:A (3.16) BS01 E5E ? GO:0016020 ... Q05940 N/A
    8 8wtv:A (2.7) BS01 E5E N/A N/A P23975 39085602
    9 8wtv:A (2.7) BS02 E5E N/A N/A P23975 39085602
    10 8xo9:A (3.2) BS01 E5E ? GO:0022857 ... Q05940 N/A
    11 8y95:A (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    12 8y95:D (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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