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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rqi:A (2.42) BS03 DST 2.5.1.10 GO:0004161 ... P22939 14672944
    2 1rqi:B (2.42) BS03 DST 2.5.1.10 GO:0004161 ... P22939 14672944
    3 2ze6:A (2.1) BS01 DST 2.5.1.27 GO:0005515 ... P58758 18258747
    4 2ze7:A (2.1) BS02 DST 2.5.1.27 GO:0005515 ... P58758 18258747
    5 2zxu:A (2.75) BS02 DST 2.5.1.75 GO:0005524 ... P16384 19435325
    6 2zxu:B (2.75) BS03 DST 2.5.1.75 GO:0005524 ... P16384 19435325
    7 3epk:A (3.2) BS03 DST 2.5.1.75 GO:0000049 ... P07884 18852462
    8 3i4x:A (2.1) BS01 DST 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    9 3i4x:B (2.1) BS01 DST 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    10 3krf:D (2.2) BS02 DST 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    11 3kro:D (1.95) BS02 DST 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    12 3n0g:A (2.8) BS01 DST 4.2.3.27 GO:0000287 ... Q9AR86 20624401
    13 3n0g:B (2.8) BS01 DST 4.2.3.27 GO:0000287 ... Q9AR86 20624401
    14 3o2k:A (2.4) BS01 DST 2.5.1.106
    3.4.11.17    		 GO:0004177 ... Q4WAW7 21105662
    15 3oab:A (2.3) BS01 DST 2.5.1.1 GO:0004659 ... Q9SBR3 20965200
    16 3oab:D (2.3) BS02 DST 2.5.1.1 GO:0004659 ... Q9SBR3 20965200
    17 3oac:D (2.6) BS02 DST 2.5.1.1 GO:0004659 ... Q9SBR3 20965200
    18 4yla:A (1.4) BS02 DST ? GO:0009820 ... I7EIW6 26952246
    19 4yzl:A (2.096) BS02 DST ? GO:0009820 ... A0A077K887 26952246
    20 5hc7:A (2.05) BS01 DST 2.5.1.- GO:0002094 ... A0A140UHQ1 26922900
    21 5hc7:A (2.05) BS02 DST 2.5.1.- GO:0002094 ... A0A140UHQ1 26922900
    22 5hxq:A (1.95) BS01 DST 2.5.1.92 GO:0016765 ... B8XA40 N/A
    23 5hxt:A (2.15) BS01 DST 2.5.1.92 GO:0016765 ... B8XA40 N/A
    24 5hxt:B (2.15) BS01 DST 2.5.1.92 GO:0016765 ... B8XA40 N/A
    25 5inj:A (1.4) BS02 DST ? GO:0009820 ... A0A182DWE5 28166207
    26 5kcl:A (2.1) BS01 DST ? GO:0009820 ... A0A1B0UHJ4 27992881
    27 5kcl:B (2.1) BS01 DST ? GO:0009820 ... A0A1B0UHJ4 27992881
    28 5kd6:A (1.84) BS01 DST ? GO:0009820 ... A0A1B0UHJ4 27992881
    29 5kd6:B (1.84) BS02 DST ? GO:0009820 ... A0A1B0UHJ4 27992881
    30 5kda:A (2.0) BS02 DST ? GO:0009820 ... A0A1B0UHJ4 27992881
    31 5kda:B (2.0) BS01 DST ? GO:0009820 ... A0A1B0UHJ4 27992881
    32 5tu4:A (2.1) BS01 DST ? GO:0016740 ... F5B6Z0 27872314
    33 5tu5:A (1.9) BS02 DST ? GO:0016740 ... F5B6Z0 27872314
    34 5tu6:A (2.22) BS03 DST ? GO:0016740 ... F5B6Z0 27872314
    35 5y72:A (1.65) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    36 5y72:B (1.65) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    37 5y7c:A (2.003) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    38 5y7c:B (2.003) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    39 5y84:A (2.0) BS02 DST ? GO:0004659 ... V5TDY7 29178634
    40 5y84:B (2.0) BS02 DST ? GO:0004659 ... V5TDY7 29178634
    41 5ygk:A (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    42 5ygk:A (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    43 5ygk:B (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    44 5ygk:B (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    45 5ygk:C (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    46 5ygk:C (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    47 5ygk:D (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    48 5ygk:D (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    49 5ygk:E (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    50 5ygk:E (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    51 5ygk:F (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    52 5ygk:F (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    53 5ygk:G (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    54 5ygk:G (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    55 5ygk:H (2.047) BS01 DST ? GO:0002094 ... X5IYJ5 30345154
    56 5ygk:H (2.047) BS02 DST ? GO:0002094 ... X5IYJ5 30345154
    57 5ygk:H (2.047) BS03 DST ? GO:0002094 ... X5IYJ5 30345154
    58 5ynv:A (1.7) BS01 DST ? GO:0004659 ... V5TDY7 29229390
    59 5ynv:B (1.7) BS01 DST ? GO:0004659 ... V5TDY7 29229390
    60 5ynw:A (1.95) BS01 DST ? GO:0004659 ... V5TDY7 29229390
    61 5ynw:B (1.95) BS02 DST ? GO:0004659 ... V5TDY7 29229390
    62 6os6:A (1.33) BS01 DST ? GO:0009820 ... A8M6W6 31251043 MOAD: Kd=1uM
    63 6vya:A (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    64 6vya:B (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    65 6vya:C (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    66 6vya:D (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    67 6vya:E (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    68 6vya:F (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    69 6vya:G (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    70 6vya:H (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    71 6vya:I (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    72 6vya:J (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    73 6vya:K (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    74 6vya:L (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    75 6vya:M (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    76 6vya:N (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    77 6vya:O (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    78 6vya:P (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    79 6vya:Q (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    80 6vya:R (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    81 6vya:S (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    82 6vya:T (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    83 6vya:U (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    84 6vya:V (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    85 6vya:W (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    86 6vya:X (3.0) BS02 DST 2.5.1.109 GO:0004659 ... E0Y3X1 36223664
    87 7w8v:A (1.61) BS01 DST ? GO:0009820 ... D6RT90 35074664
    88 7w8w:A (1.8) BS01 DST ? GO:0009820 ... D6RT90 35074664
    89 7w8x:A (1.45) BS01 DST ? GO:0009820 ... D6RT90 35074664
    90 7w8y:A (1.39) BS01 DST ? GO:0009820 ... D6RT90 35074664
    91 8day:A (2.55) BS02 DST 2.5.1.- GO:0009820 ... S0EH60 36084241
    92 8db0:B (2.26) BS01 DST 2.5.1.- GO:0009820 ... S0EH60 36084241
    93 8db0:C (2.26) BS01 DST 2.5.1.- GO:0009820 ... S0EH60 36084241
    94 8x35:A (1.92) BS02 DST 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    95 8x36:A (2.28) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    96 8x36:B (2.28) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    97 8x37:A (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    98 8x37:A (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    99 8x37:B (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    100 8x37:B (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    101 8x37:B (1.98) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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