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BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ee1:A (2.06) BS01 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    2 1ee1:A (2.06) BS03 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    3 1ee1:B (2.06) BS01 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    4 1ee1:B (2.06) BS02 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    5 1ifx:A (2.25) BS01 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    6 1ifx:A (2.25) BS02 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    7 1ifx:B (2.25) BS01 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    8 1ifx:B (2.25) BS02 DND 6.3.1.5 GO:0003952 ... P08164 11375500
    9 1kaq:A (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    10 1kaq:B (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    11 1kaq:C (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    12 1kaq:D (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    13 1kaq:E (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    14 1kaq:F (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    15 1kqo:A (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    16 1kqo:B (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    17 1kqo:C (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    18 1kqo:D (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    19 1kqo:E (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    20 1kqo:F (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    21 1nuq:A (1.9) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q96T66 12574164
    22 1nuq:B (1.9) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q96T66 12574164
    23 1wxg:A (1.9) BS02 DND 6.3.1.5 GO:0000287 ... P18843 15699042
    24 1xng:A (1.7) BS01 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    25 1xng:A (1.7) BS03 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    26 1xng:B (1.7) BS01 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    27 1xng:B (1.7) BS02 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    28 1xqd:A (1.8) BS02 DND 1.7.1.14 GO:0004497 ... P23295 15313618 MOAD: Kd=0.07mM
    29 2h29:A (2.0) BS01 DND 2.7.7.18 GO:0003824 ... Q5HFG7 16784754
    30 2h29:B (2.0) BS01 DND 2.7.7.18 GO:0003824 ... Q5HFG7 16784754
    31 2h2a:A (2.1) BS01 DND 2.7.7.18 GO:0003824 ... Q5HFG7 16784754
    32 2h2a:B (2.1) BS01 DND 2.7.7.18 GO:0003824 ... Q5HFG7 16784754
    33 2qtr:A (1.7) BS01 DND 2.7.7.18 GO:0003824 ... C3L5T6 18977360 MOAD: Kd=3.2uM
    34 2qtr:B (1.7) BS01 DND 2.7.7.18 GO:0003824 ... C3L5T6 18977360 MOAD: Kd=3.2uM
    35 2qtr:C (1.7) BS01 DND 2.7.7.18 GO:0003824 ... C3L5T6 18977360 MOAD: Kd=3.2uM
    36 3dla:A (2.35) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    37 3dla:A (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    38 3dla:B (2.35) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    39 3dla:B (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    40 3dla:C (2.35) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    41 3dla:C (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    42 3dla:D (2.35) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    43 3dla:D (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    44 3e27:A (2.2) BS01 DND N/A GO:0003824 ... N/A 19716475
    45 3e27:B (2.2) BS01 DND N/A GO:0003824 ... N/A 19716475
    46 3e27:C (2.2) BS01 DND N/A GO:0003824 ... N/A 19716475
    47 3e27:D (2.2) BS01 DND N/A GO:0003824 ... N/A 19716475
    48 3seq:A (2.7342) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    49 3seq:A (2.7342) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    50 3seq:B (2.7342) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    51 3seq:B (2.7342) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    52 3seq:C (2.7342) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    53 3seq:C (2.7342) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    54 3seq:D (2.7342) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    55 3seq:D (2.7342) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    56 3sez:A (2.6529) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    57 3sez:A (2.6529) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    58 3sez:B (2.6529) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    59 3sez:B (2.6529) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    60 3sez:C (2.6529) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    61 3sez:C (2.6529) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    62 3sez:D (2.6529) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    63 3sez:D (2.6529) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    64 3szg:A (2.25) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    65 3szg:A (2.25) BS04 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    66 3szg:B (2.25) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    67 3szg:B (2.25) BS04 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    68 3szg:C (2.25) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    69 3szg:C (2.25) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    70 3szg:D (2.25) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    71 3szg:D (2.25) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    72 5deo:A (2.22) BS01 DND 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    73 5deo:B (2.22) BS01 DND 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    74 5deo:C (2.22) BS01 DND 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    75 5deo:D (2.22) BS01 DND 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    76 5j8d:A (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    77 5j8d:A (1.85) BS03 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    78 5j8d:B (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    79 5j8d:B (1.85) BS03 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    80 5j8d:C (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    81 5j8d:C (1.85) BS04 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    82 5j8d:D (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    83 5j8d:D (1.85) BS04 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    84 5llt:A (2.2) BS01 DND 2.7.7.18 GO:0003824 ... Q8IE38 27984041
    85 5llt:B (2.2) BS01 DND 2.7.7.18 GO:0003824 ... Q8IE38 27984041
    86 6ofb:A (2.84) BS01 DND 6.3.5.1 GO:0003952 ... Q6IA69 31911602
    87 6ofb:A (2.84) BS05 DND 6.3.5.1 GO:0003952 ... Q6IA69 31911602
    88 6ofb:B (2.84) BS01 DND 6.3.5.1 GO:0003952 ... Q6IA69 31911602
    89 6ofb:B (2.84) BS02 DND 6.3.5.1 GO:0003952 ... Q6IA69 31911602
    90 8soq:A (3.1) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    91 8soq:B (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    92 8soq:C (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    93 8soq:D (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    94 8soq:E (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    95 8std:A (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    96 8std:B (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    97 8std:C (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    98 8std:D (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    99 8std:E (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    100 8std:F (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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