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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fo2:A (2.38) BS01 DMJ 3.2.1.113 GO:0004571 ... Q9UKM7 10995765 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    2 1g6i:A (1.59) BS01 DMJ 3.2.1.113 GO:0004559 ... P32906 N/A
    3 1hxk:A (1.5) BS02 DMJ 3.2.1.114 GO:0000139 ... Q24451 11406577 MOAD: ic50=400uM
    PDBbind: -logKd/Ki=3.40, IC50=400uM
    4 1kre:A (2.2) BS01 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    5 1kre:B (2.2) BS02 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    6 3qry:A (1.75) BS01 DMJ ? GO:0003824 ... A0A0H2URZ6 21388958
    7 3qry:B (1.75) BS01 DMJ ? GO:0003824 ... A0A0H2URZ6 21388958
    8 4ad3:A (2.0) BS02 DMJ 3.2.1.130 GO:0004559 ... D6D1V7 22219371 PDBbind: -logKd/Ki=4.62, Kd=24uM
    9 4ad3:B (2.0) BS02 DMJ 3.2.1.130 GO:0004559 ... D6D1V7 22219371
    10 4ad3:C (2.0) BS02 DMJ 3.2.1.130 GO:0004559 ... D6D1V7 22219371
    11 4ad3:D (2.0) BS02 DMJ 3.2.1.130 GO:0004559 ... D6D1V7 22219371
    12 4ad5:A (1.9) BS04 DMJ 3.2.1.130 GO:0004559 ... D6D1V7 22219371
    13 4aq0:B (2.09) BS02 DMJ 3.2.1.24 GO:0000224 ... M1E1E9 23159880
    14 4d4c:A (1.3) BS01 DMJ 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    15 4d4c:B (1.3) BS01 DMJ 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    16 5meh:A (0.95) BS01 DMJ 3.2.1.113 GO:0004559 ... B0SWV2 28256791 MOAD: Kd=481nM
    PDBbind: -logKd/Ki=6.32, Kd=481nM
    17 6zj5:AAA (2.269) BS03 DMJ 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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