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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ai4:B (2.35) BS02 DHY 3.5.1.11 GO:0016787 ... P06875 9813130 MOAD: Ki=3.13mM
    PDBbind: -logKd/Ki=2.50, Ki=3.13mM
    2 1f1v:A (1.9) BS02 DHY 1.13.11.15 GO:0003824 ... Q44048 15028678
    3 1f1v:B (1.9) BS02 DHY 1.13.11.15 GO:0003824 ... Q44048 15028678
    4 1q0c:A (2.1) BS02 DHY 1.13.11.15 GO:0046872 ... Q45135 15028678
    5 1q0c:B (2.1) BS02 DHY 1.13.11.15 GO:0046872 ... Q45135 15028678
    6 1q0c:C (2.1) BS02 DHY 1.13.11.15 GO:0046872 ... Q45135 15028678
    7 1q0c:D (2.1) BS02 DHY 1.13.11.15 GO:0046872 ... Q45135 15028678
    8 3mfl:A (1.78) BS01 DHY 1.13.11.3 GO:0003824 ... P00436 N/A
    9 3mfl:B (1.78) BS01 DHY 1.13.11.3 GO:0003824 ... P00436 N/A
    10 3mfl:C (1.78) BS01 DHY 1.13.11.3 GO:0003824 ... P00436 N/A
    11 3mfl:M (1.78) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 N/A
    12 3mfl:N (1.78) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 N/A
    13 3mfl:O (1.78) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 N/A
    14 3pcn:A (2.4) BS01 DHY 1.13.11.3 GO:0003824 ... P00436 9298971 PDBbind: -logKd/Ki=3.66, Kd=220uM
    15 3pcn:C (2.4) BS01 DHY 1.13.11.3 GO:0003824 ... P00436 9298971
    16 3pcn:D (2.4) BS01 DHY 1.13.11.3 GO:0003824 ... P00436 9298971
    17 3pcn:F (2.4) BS01 DHY 1.13.11.3 GO:0003824 ... P00436 9298971
    18 3pcn:M (2.4) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 9298971 MOAD: Kd=220uM
    PDBbind: -logKd/Ki=3.66, Kd=220uM
    19 3pcn:N (2.4) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 9298971 MOAD: Kd=220uM
    20 3pcn:O (2.4) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 9298971 MOAD: Kd=220uM
    21 3pcn:P (2.4) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 9298971 MOAD: Kd=220uM
    22 3pcn:Q (2.4) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 9298971 MOAD: Kd=220uM
    23 3pcn:R (2.4) BS02 DHY 1.13.11.3 GO:0003824 ... P00437 9298971 MOAD: Kd=220uM
    24 4ghd:C (1.85) BS02 DHY 1.13.11.15 GO:0046872 ... Q45135 23066739
    25 4ghg:C (1.5) BS02 DHY 1.13.11.15 GO:0046872 ... Q45135 23066739
    26 4z6o:C (1.63) BS02 DHY ? GO:0046872 ... Q45135 26267790
    27 4z6o:D (1.63) BS02 DHY ? GO:0046872 ... Q45135 26267790
    28 4z6p:C (1.75) BS02 DHY ? GO:0046872 ... Q45135 26267790
    29 4z6q:C (1.57) BS02 DHY ? GO:0046872 ... Q45135 26267790
    30 4z6q:D (1.57) BS02 DHY ? GO:0046872 ... Q45135 26267790
    31 5bwh:C (1.46) BS02 DHY ? GO:0046872 ... Q45135 26485328
    32 5bwh:D (1.46) BS02 DHY ? GO:0046872 ... Q45135 26485328
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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