Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 668 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4qfz:B (2.3) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    202 4qfz:C (2.3) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    203 4qfz:C (2.3) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    204 4qfz:D (2.3) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    205 4qfz:D (2.3) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    206 4qg0:A (2.3) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    207 4qg0:A (2.3) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    208 4qg0:B (2.3) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    209 4qg0:B (2.3) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    210 4qg0:C (2.3) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    211 4qg0:C (2.3) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    212 4qg0:D (2.3) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    213 4qg0:D (2.3) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25288794
    214 4tnx:A (2.31) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    215 4tnx:A (2.31) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    216 4tnx:A (2.31) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    217 4tnx:B (2.31) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    218 4tnx:B (2.31) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    219 4tnx:B (2.31) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    220 4tnx:C (2.31) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    221 4tnx:C (2.31) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    222 4tnx:C (2.31) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    223 4tnx:D (2.31) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    224 4tnx:D (2.31) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    225 4tnx:D (2.31) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    226 4tny:A (2.6) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    227 4tny:A (2.6) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    228 4tny:A (2.6) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    229 4tny:B (2.6) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    230 4tny:B (2.6) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    231 4tny:B (2.6) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    232 4tny:C (2.6) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    233 4tny:C (2.6) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    234 4tny:C (2.6) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    235 4tny:D (2.6) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    236 4tny:D (2.6) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    237 4tny:D (2.6) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    238 4to2:A (2.27) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    239 4to2:A (2.27) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    240 4to2:A (2.27) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    241 4to2:A (2.27) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    242 4to2:A (2.27) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    243 4to2:A (2.27) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    244 4to2:B (2.27) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    245 4to2:B (2.27) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    246 4to2:B (2.27) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    247 4to2:B (2.27) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    248 4to2:B (2.27) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    249 4to2:B (2.27) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    250 4to2:C (2.27) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    251 4to2:C (2.27) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    252 4to2:C (2.27) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    253 4to2:C (2.27) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    254 4to2:C (2.27) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    255 4to2:D (2.27) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    256 4to2:D (2.27) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    257 4to2:D (2.27) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    258 4to2:D (2.27) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    259 4to2:D (2.27) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    260 4to2:D (2.27) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    261 4to3:A (2.2) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    262 4to3:A (2.2) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    263 4to3:A (2.2) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    264 4to3:A (2.2) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    265 4to3:A (2.2) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    266 4to3:B (2.2) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    267 4to3:B (2.2) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    268 4to3:B (2.2) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    269 4to3:B (2.2) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    270 4to3:B (2.2) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    271 4to3:C (2.2) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    272 4to3:C (2.2) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    273 4to3:C (2.2) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    274 4to3:C (2.2) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    275 4to3:C (2.2) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    276 4to3:D (2.2) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    277 4to3:D (2.2) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    278 4to3:D (2.2) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    279 4to3:D (2.2) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    280 4to3:D (2.2) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    281 4to4:A (2.1) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    282 4to4:A (2.1) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    283 4to4:A (2.1) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    284 4to4:B (2.1) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    285 4to4:B (2.1) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    286 4to4:B (2.1) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    287 4to4:C (2.1) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    288 4to4:C (2.1) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    289 4to4:C (2.1) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    290 4to4:D (2.1) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    291 4to4:D (2.1) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    292 4to4:D (2.1) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    293 4to6:A (2.33) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    294 4to6:A (2.33) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    295 4to6:B (2.33) BS03 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    296 4to6:B (2.33) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    297 4to6:C (2.33) BS02 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    298 4to6:C (2.33) BS04 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    299 4to6:C (2.33) BS05 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    300 4to6:D (2.33) BS01 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    301 4to6:D (2.33) BS06 DGT 3.1.5.- N/A Q9Y3Z3 25267621
    302 4ub4:A (1.954) BS06 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25409153
    303 4zwe:A (2.81) BS01 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    304 4zwe:A (2.81) BS02 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    305 4zwe:A (2.81) BS03 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    306 4zwe:A (2.81) BS04 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    307 4zwe:A (2.81) BS05 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    308 4zwe:A (2.81) BS06 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    309 4zwe:B (2.81) BS01 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    310 4zwe:B (2.81) BS02 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    311 4zwe:B (2.81) BS04 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    312 4zwe:B (2.81) BS05 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    313 4zwe:B (2.81) BS06 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    314 4zwe:B (2.81) BS07 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    315 4zwe:C (2.81) BS01 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    316 4zwe:C (2.81) BS02 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    317 4zwe:C (2.81) BS03 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    318 4zwe:C (2.81) BS04 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    319 4zwe:C (2.81) BS05 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    320 4zwe:C (2.81) BS06 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    321 4zwe:D (2.81) BS01 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    322 4zwe:D (2.81) BS02 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    323 4zwe:D (2.81) BS03 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    324 4zwe:D (2.81) BS04 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    325 4zwe:D (2.81) BS05 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    326 4zwe:D (2.81) BS06 DGT 3.1.5.- N/A Q9Y3Z3 26294762
    327 5ao2:A (2.966) BS02 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    328 5ao2:A (2.966) BS03 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    329 5ao2:B (2.966) BS01 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    330 5ao2:B (2.966) BS03 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    331 5ao2:C (2.966) BS02 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    332 5ao2:C (2.966) BS03 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    333 5ao2:D (2.966) BS01 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    334 5ao2:D (2.966) BS02 DGT 3.1.5.- N/A Q9Y3Z3 26431200
    335 5ca7:A (2.522) BS01 DGT 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    336 5chg:B (2.9) BS02 DGT 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    337 5cnu:A (3.4) BS01 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    338 5cnu:A (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    339 5cnu:B (3.4) BS01 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    340 5cnu:B (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    341 5cnu:C (3.4) BS03 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    342 5cnu:C (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    343 5cnu:D (3.4) BS01 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    344 5cnu:D (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    345 5hrf:A (2.25) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    346 5hrf:B (2.25) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    347 5hrh:A (3.0) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    348 5hrh:B (3.0) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    349 5hri:A (2.2) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    350 5hri:B (2.2) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    351 5hrk:A (2.9) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    352 5hrk:B (2.9) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    353 5hrl:A (2.4) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    354 5hrl:B (2.4) BS03 DGT 2.7.7.7 GO:0003677 ... P42494 N/A
    355 5tfi:A (1.891) BS02 DGT 5.6.1.6 GO:0005524 ... P13569 N/A
    356 5xn2:A (2.381) BS03 DGT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 29374261
    357 5xn2:C (2.381) BS03 DGT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 29374261
    358 5yhw:A (2.7) BS01 DGT ? N/A I3LG77 31152619
    359 5yhw:A (2.7) BS02 DGT ? N/A I3LG77 31152619
    360 5yhw:A (2.7) BS03 DGT ? N/A I3LG77 31152619
    361 5yhw:A (2.7) BS04 DGT ? N/A I3LG77 31152619
    362 5yhw:A (2.7) BS05 DGT ? N/A I3LG77 31152619
    363 5yhw:A (2.7) BS06 DGT ? N/A I3LG77 31152619
    364 5yhw:B (2.7) BS01 DGT ? N/A I3LG77 31152619
    365 5yhw:B (2.7) BS02 DGT ? N/A I3LG77 31152619
    366 5yhw:B (2.7) BS03 DGT ? N/A I3LG77 31152619
    367 5yhw:B (2.7) BS04 DGT ? N/A I3LG77 31152619
    368 5yhw:B (2.7) BS05 DGT ? N/A I3LG77 31152619
    369 5yhw:B (2.7) BS06 DGT ? N/A I3LG77 31152619
    370 5yhw:C (2.7) BS01 DGT ? N/A I3LG77 31152619
    371 5yhw:C (2.7) BS02 DGT ? N/A I3LG77 31152619
    372 5yhw:C (2.7) BS03 DGT ? N/A I3LG77 31152619
    373 5yhw:C (2.7) BS04 DGT ? N/A I3LG77 31152619
    374 5yhw:C (2.7) BS05 DGT ? N/A I3LG77 31152619
    375 5yhw:C (2.7) BS06 DGT ? N/A I3LG77 31152619
    376 5yhw:D (2.7) BS01 DGT ? N/A I3LG77 31152619
    377 5yhw:D (2.7) BS02 DGT ? N/A I3LG77 31152619
    378 5yhw:D (2.7) BS03 DGT ? N/A I3LG77 31152619
    379 5yhw:D (2.7) BS04 DGT ? N/A I3LG77 31152619
    380 5yhw:D (2.7) BS06 DGT ? N/A I3LG77 31152619
    381 5yhw:E (2.7) BS01 DGT ? N/A I3LG77 31152619
    382 5yhw:E (2.7) BS02 DGT ? N/A I3LG77 31152619
    383 5yhw:E (2.7) BS03 DGT ? N/A I3LG77 31152619
    384 5yhw:E (2.7) BS04 DGT ? N/A I3LG77 31152619
    385 5yhw:E (2.7) BS05 DGT ? N/A I3LG77 31152619
    386 5yhw:E (2.7) BS06 DGT ? N/A I3LG77 31152619
    387 5yhw:F (2.7) BS01 DGT ? N/A I3LG77 31152619
    388 5yhw:F (2.7) BS02 DGT ? N/A I3LG77 31152619
    389 5yhw:F (2.7) BS03 DGT ? N/A I3LG77 31152619
    390 5yhw:F (2.7) BS04 DGT ? N/A I3LG77 31152619
    391 5yhw:F (2.7) BS05 DGT ? N/A I3LG77 31152619
    392 5yhw:F (2.7) BS06 DGT ? N/A I3LG77 31152619
    393 5yhw:G (2.7) BS01 DGT ? N/A I3LG77 31152619
    394 5yhw:G (2.7) BS02 DGT ? N/A I3LG77 31152619
    395 5yhw:G (2.7) BS03 DGT ? N/A I3LG77 31152619
    396 5yhw:G (2.7) BS04 DGT ? N/A I3LG77 31152619
    397 5yhw:G (2.7) BS05 DGT ? N/A I3LG77 31152619
    398 5yhw:G (2.7) BS07 DGT ? N/A I3LG77 31152619
    399 5yhw:H (2.7) BS01 DGT ? N/A I3LG77 31152619
    400 5yhw:H (2.7) BS02 DGT ? N/A I3LG77 31152619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417