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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bpy:A (2.2) BS06 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 9287163
    2 1s97:A (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    3 1s97:B (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4 1s97:C (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    5 1s97:D (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    6 1t8e:A (2.54) BS05 DCT 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    7 1tk0:A (2.3) BS05 DCT 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    8 2bpf:A (2.9) BS05 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06766 7516580
    9 2bpg:A (3.6) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06766 7516580
    10 2bpg:B (3.6) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06766 7516580
    11 2c2r:A (2.55) BS03 DCT 2.7.7.7 GO:0000287 ... Q97W02 16306039
    12 2fmp:A (1.65) BS05 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 16615916
    13 2hvh:A (2.492) BS07 DCT 2.7.7.7 GO:0003676 ... Q45458 17179038
    14 2hvh:D (2.492) BS06 DCT 2.7.7.7 GO:0003676 ... Q45458 17179038
    15 2hvi:A (1.98) BS05 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    16 2hvi:A (1.98) BS06 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    17 2hvi:D (1.98) BS05 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    18 2ktq:A (2.3) BS04 DCT 2.7.7.7 GO:0001882 ... P19821 9857206
    19 2v9w:A (3.0) BS05 DCT 2.7.7.7 GO:0000287 ... Q97W02 17951245
    20 2v9w:B (3.0) BS05 DCT 2.7.7.7 GO:0000287 ... Q97W02 17951245
    21 2va2:A (2.8) BS05 DCT 2.7.7.7 GO:0000287 ... Q97W02 17951245
    22 2va2:B (2.8) BS05 DCT 2.7.7.7 GO:0000287 ... Q97W02 17951245
    23 3ktq:A (2.3) BS05 DCT 2.7.7.7 GO:0001882 ... P19821 9857206
    24 3olb:A (2.41) BS05 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B3VQP5 21148772
    25 3olb:E (2.41) BS05 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B3VQP5 21148772
    26 3olb:I (2.41) BS05 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B3VQP5 21148772
    27 3olb:M (2.41) BS05 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B3VQP5 21148772
    28 3px4:A (1.582) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    29 3px4:D (1.582) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    30 3px6:A (1.59) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    31 3px6:A (1.59) BS04 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    32 3px6:D (1.59) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    33 3py8:A (1.74) BS03 DCT 2.7.7.7 GO:0001882 ... P19821 21480455
    34 4bwj:A (1.55) BS03 DCT 2.7.7.7 GO:0001882 ... P19821 24106012
    35 4bwm:A (1.749) BS03 DCT 2.7.7.7 GO:0001882 ... P19821 24106012
    36 4dle:A (2.44) BS04 DCT 2.7.7.7 GO:0001882 ... P19821 N/A
    37 4dlg:A (1.89) BS03 DCT 2.7.7.7 GO:0001882 ... P19821 N/A
    38 4dqp:A (1.74) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    39 4dqp:A (1.74) BS04 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    40 4dqp:D (1.74) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    41 4k4y:A (2.72) BS04 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... Q5UEA2 23667424
    42 4k4y:E (2.72) BS03 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... Q5UEA2 23667424
    43 4k4y:I (2.72) BS03 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... Q5UEA2 23667424
    44 4k4y:M (2.72) BS03 DCT 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... Q5UEA2 23667424
    45 4n5s:A (1.67) BS05 DCT 2.7.7.7 GO:0001882 ... P19821 25537790
    46 4qz8:A (2.7) BS05 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    47 4qz9:A (2.05) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    48 4qza:A (2.15) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    49 4qzb:A (2.15) BS05 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    50 4qzc:A (2.75) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    51 4qzd:A (2.7) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    52 4qze:A (2.25) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    53 4qzf:A (2.6) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    54 4qzg:A (2.75) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    55 4qzh:A (2.6) BS06 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    56 4qzi:A (2.65) BS07 DCT 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 25762590
    57 4u6p:A (2.593) BS07 DCT 2.7.7.7 GO:0003684 ... Q9UBT6 27034468
    58 4u6p:B (2.593) BS06 DCT 2.7.7.7 GO:0003684 ... Q9UBT6 27034468
    59 4ztu:A (3.299) BS04 DCT 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 26056153
    60 5iij:A (1.724) BS04 DCT 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 27481934
    61 6go4:A (1.96) BS02 DCT 2.7.7.31
    2.7.7.7
    3.1.11.-    		 GO:0003677 ... P09838
    Q9JIW4    		 31138645
    62 6go6:A (2.09) BS04 DCT 2.7.7.31
    2.7.7.7
    3.1.11.-    		 GO:0003677 ... P09838
    Q9JIW4    		 31138645
    63 6go7:A (2.55) BS05 DCT 2.7.7.31
    2.7.7.7
    3.1.11.-    		 GO:0003677 ... P09838
    Q9JIW4    		 31138645
    64 6p2g:A (2.99) BS03 DCT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 31301259
    65 6vdd:A (1.9) BS03 DCT 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    66 6vdd:D (1.9) BS03 DCT 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    67 7rr3:A (2.24) BS04 DCT 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 34975792
    68 9icn:A (3.0) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    69 9ics:A (2.9) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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