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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b5d:A (2.2) BS01 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    2 1b5d:A (2.2) BS02 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    3 1b5d:B (2.2) BS01 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    4 1b5d:B (2.2) BS02 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    5 1b5e:A (1.6) BS01 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    6 1b5e:A (1.6) BS02 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    7 1b5e:B (1.6) BS01 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    8 1b5e:B (1.6) BS02 DCM 2.1.2.8 GO:0016740 ... P08773 10064578
    9 1nja:A (2.5) BS01 DCM 2.1.1.45 GO:0004799 ... P00469 8611496 MOAD: Kd=0.49uM
    PDBbind: -logKd/Ki=6.31, Kd=0.49uM
    10 1njc:A (2.5) BS01 DCM 2.1.1.45 GO:0004799 ... P00469 8611496 MOAD: Kd=2.8uM
    PDBbind: -logKd/Ki=5.55, Kd=2.8uM
    11 1nje:A (2.3) BS01 DCM 2.1.1.45 GO:0004799 ... P00469 8611496 MOAD: Kd=160uM
    PDBbind: -logKd/Ki=3.80, Kd=160uM
    12 2jat:A (2.6) BS02 DCM 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    13 2jat:B (2.6) BS02 DCM 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    14 2qrn:A (3.4) BS03 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    15 2qrn:B (3.4) BS03 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    16 2qrn:C (3.4) BS03 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    17 2qrn:D (3.4) BS03 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    18 4p9c:A (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    19 4p9c:B (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    20 4p9c:C (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    21 4p9c:D (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    22 4p9c:E (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    23 4p9c:F (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    24 4p9c:G (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    25 4p9c:H (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    26 4p9c:I (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    27 4p9c:J (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    28 4p9c:K (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    29 4p9c:L (2.6) BS02 DCM ? GO:0000166 ... H6WFU3 25404739
    30 5arl:A (2.61) BS01 DCM 3.1.27.- GO:0003676 ... P15468 26748441
    31 5arl:B (2.61) BS01 DCM 3.1.27.- GO:0003676 ... P15468 26748441
    32 5arl:C (2.61) BS01 DCM 3.1.27.- GO:0003676 ... P15468 26748441
    33 5arl:D (2.61) BS01 DCM 3.1.27.- GO:0003676 ... P15468 26748441
    34 5fbf:A (1.04) BS04 DCM 3.1.30.1 GO:0003676 ... P24021 28036383
    35 5fbf:A (1.04) BS05 DCM 3.1.30.1 GO:0003676 ... P24021 28036383
    36 5jp9:A (2.101) BS01 DCM ? GO:0004799 ... B4Y380 28000775
    37 5jp9:A (2.101) BS02 DCM ? GO:0004799 ... B4Y380 28000775
    38 5jp9:B (2.101) BS01 DCM ? GO:0004799 ... B4Y380 28000775
    39 5jp9:B (2.101) BS02 DCM ? GO:0004799 ... B4Y380 28000775
    40 5mql:B (3.25) BS02 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 29127277
    41 5mql:C (3.25) BS02 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 29127277
    42 5mqt:B (3.2) BS02 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 29127277
    43 5mqt:D (3.2) BS02 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 29127277
    44 5w0u:A (2.9) BS02 DCM 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    45 5w0u:B (2.9) BS04 DCM 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    46 5xpd:A (2.788) BS01 DCM ? GO:0005506 ... Q9FGQ2 28878024
    47 5zrg:A (1.3) BS01 DCM 3.6.1.55 GO:0000166 ... A0R2K6 30312643
    48 6a46:A (2.0) BS02 DCM 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    49 6a46:B (2.0) BS01 DCM 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    50 6a9a:A (1.9) BS01 DCM 2.1.2.8 GO:0016740 ... P08773 30867918
    51 6sqy:A (1.9) BS02 DCM 3.6.1.12 GO:0000166 ... Q9QY93 31954130
    52 6sqy:D (1.9) BS02 DCM 3.6.1.12 GO:0000166 ... Q9QY93 31954130
    53 7fh4:A (1.996) BS01 DCM ? GO:0000166 ... O41078 35764100
    54 7fh4:B (1.996) BS01 DCM ? GO:0000166 ... O41078 35764100
    55 7p9t:A (1.79) BS04 DCM 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    56 8hcd:B (2.0) BS02 DCM 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    57 8hcd:D (2.0) BS01 DCM 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    58 8hcd:E (2.0) BS01 DCM 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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