Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g1l:A (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    2 1g1l:A (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    3 1g1l:A (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    4 1g1l:B (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    5 1g1l:B (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    6 1g1l:B (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    7 1g1l:C (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8 1g1l:C (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    9 1g1l:C (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    10 1g1l:D (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11 1g1l:D (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12 1g1l:D (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13 1g1l:E (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    14 1g1l:E (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    15 1g1l:E (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    16 1g1l:F (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    17 1g1l:F (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    18 1g1l:F (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    19 1g1l:G (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    20 1g1l:G (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    21 1g1l:G (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    22 1g1l:H (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    23 1g1l:H (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    24 1g1l:H (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    25 1h5t:A (1.9) BS02 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    26 1h5t:B (1.9) BS02 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    27 1h5t:C (1.9) BS03 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    28 1h5t:D (1.9) BS03 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    29 1ker:A (2.2) BS01 DAU 4.2.1.46 GO:0000166 ... Q8GIP9 11796113
    30 1ker:B (2.2) BS01 DAU 4.2.1.46 GO:0000166 ... Q8GIP9 11796113
    31 1keu:A (2.4) BS01 DAU 4.2.1.46 GO:0008460 ... P26391 11796113
    32 1keu:B (2.4) BS01 DAU 4.2.1.46 GO:0008460 ... P26391 11796113
    33 1nyw:A (1.6) BS01 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    34 1nyw:A (1.6) BS02 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    35 1nyw:B (1.6) BS01 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36 1nyw:B (1.6) BS02 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    37 1r6d:A (1.35) BS02 DAU 4.2.1.46 GO:0000166 ... Q9ZGH3 14570895
    38 4ecm:A (2.3) BS01 DAU 2.7.7.24 GO:0008879 ... A0A6L8PCC3 29095156
    39 4ho5:A (1.7) BS01 DAU 2.7.7.24 GO:0000166 ... Q9AGY4 N/A
    40 4ho5:A (1.7) BS02 DAU 2.7.7.24 GO:0000166 ... Q9AGY4 N/A
    41 4ho5:A (1.7) BS03 DAU 2.7.7.24 GO:0000166 ... Q9AGY4 N/A
    42 4ho5:B (1.7) BS01 DAU 2.7.7.24 GO:0000166 ... Q9AGY4 N/A
    43 4ho5:B (1.7) BS02 DAU 2.7.7.24 GO:0000166 ... Q9AGY4 N/A
    44 4ho5:B (1.7) BS03 DAU 2.7.7.24 GO:0000166 ... Q9AGY4 N/A
    45 4ly0:A (1.6) BS02 DAU N/A GO:0009058 ... N/A 23898784
    46 4ly0:B (1.6) BS02 DAU N/A GO:0009058 ... N/A 23898784
    47 6b5e:A (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    48 6b5e:B (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    49 6b5e:C (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    50 6b5e:D (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    51 6b5e:E (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    52 6b5e:E (1.85) BS02 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    53 6b5e:F (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    54 6b5e:F (1.85) BS02 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    55 6b5e:G (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    56 6b5e:H (1.85) BS01 DAU 2.7.7.24 GO:0000287 ... P9WH13 29076563
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417