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BioLiP
Download all results in tab-seperated text for 133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c0p:A (1.2) BS02 DAL 1.4.3.3 GO:0003884 ... P80324 11070076
    2 1iki:A (1.25) BS02 DAL 3.4.16.4 GO:0004180 ... P15555 12215418
    3 1kto:A (1.9) BS06 DAL 3.4.24.27 GO:0004222 ... P00800 N/A
    4 2j9p:A (2.8) BS02 DAL 3.4.16.4 GO:0000270 ... P39844 17582436
    5 2j9p:B (2.8) BS02 DAL 3.4.16.4 GO:0000270 ... P39844 17582436
    6 2yzm:A (2.21) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    7 2yzm:B (2.21) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    8 2yzm:C (2.21) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    9 2zdh:A (1.9) BS03 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    10 2zdh:D (1.9) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    11 2zdq:A (2.3) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    12 2zdq:A (2.3) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    13 2zdq:B (2.3) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    14 2zdq:B (2.3) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    15 3dhv:A (2.0) BS01 DAL 6.2.1.54 GO:0005524 ... Q81G39 18847223
    16 3q45:A (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    17 3q45:B (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    18 3q45:C (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    19 3q45:D (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    20 3q45:E (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    21 3q45:F (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    22 3q45:G (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    23 3q45:H (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    24 3q45:I (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    25 3q4d:A (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    26 3q4d:B (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    27 3q4d:C (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    28 3q4d:D (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    29 3q4d:E (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    30 3q4d:F (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    31 3q4d:G (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    32 3q4d:H (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    33 3q4d:I (3.0) BS02 DAL 5.1.1.- GO:0000287 ... Q11T61 22392983
    34 3tcs:A (1.88) BS03 DAL ? GO:0000287 ... Q161M1 N/A
    35 3tcs:B (1.88) BS03 DAL ? GO:0000287 ... Q161M1 N/A
    36 4c5b:A (1.5) BS02 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    37 4c5b:A (1.5) BS03 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    38 4c5b:B (1.5) BS02 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    39 4c5b:B (1.5) BS03 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    40 4c5c:A (1.4) BS02 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    41 4c5c:A (1.4) BS03 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    42 4c5c:B (1.4) BS02 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    43 4c5c:B (1.4) BS03 DAL 6.3.2.4 GO:0003824 ... P07862 29208891
    44 4dz1:A (1.9) BS01 DAL N/A GO:0015276 ... N/A 22418438
    45 4f3s:A (2.14) BS01 DAL ? GO:0006865 ... Q8ZPA3 N/A
    46 4g4x:A (1.5) BS01 DAL N/A GO:0009279 ... N/A N/A
    47 4g4z:A (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    48 4g4z:B (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    49 4g4z:C (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    50 4g4z:D (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    51 4g4z:E (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    52 4g4z:F (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    53 4g4z:G (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    54 4g4z:H (1.8) BS01 DAL ? GO:0016020 ... Q6RYW5 N/A
    55 4mut:A (2.25) BS02 DAL ? GO:0004180 ... Q9JN36 24711382
    56 4mut:B (2.25) BS02 DAL ? GO:0004180 ... Q9JN36 24711382
    57 4n8g:A (1.502) BS01 DAL ? GO:0030288 ... Q1QZT7 25540822
    58 4n8g:A (1.502) BS02 DAL ? GO:0030288 ... Q1QZT7 25540822
    59 4n8g:B (1.502) BS01 DAL ? GO:0030288 ... Q1QZT7 25540822
    60 4n8g:B (1.502) BS02 DAL ? GO:0030288 ... Q1QZT7 25540822
    61 4n8g:C (1.502) BS01 DAL ? GO:0030288 ... Q1QZT7 25540822
    62 4n8g:C (1.502) BS02 DAL ? GO:0030288 ... Q1QZT7 25540822
    63 4n8g:D (1.502) BS01 DAL ? GO:0030288 ... Q1QZT7 25540822
    64 4n8g:D (1.502) BS02 DAL ? GO:0030288 ... Q1QZT7 25540822
    65 4ngu:A (2.5) BS01 DAL ? GO:0030246 ... Q311Q1 25540822
    66 4ngu:A (2.5) BS02 DAL ? GO:0030246 ... Q311Q1 25540822
    67 4oak:A (2.0) BS02 DAL ? GO:0004180 ... Q9JN36 24711382 PDBbind: -logKd/Ki=4.22, Ki=59.7uM
    68 4oak:A (2.0) BS03 DAL ? GO:0004180 ... Q9JN36 24711382 PDBbind: -logKd/Ki=4.22, Ki=59.7uM
    69 4oak:B (2.0) BS02 DAL ? GO:0004180 ... Q9JN36 24711382 PDBbind: -logKd/Ki=4.22, Ki=59.7uM
    70 4oak:B (2.0) BS03 DAL ? GO:0004180 ... Q9JN36 24711382 PDBbind: -logKd/Ki=4.22, Ki=59.7uM
    71 4ox5:A (1.8) BS03 DAL ? GO:0006508 ... Q8DQQ1 24909784
    72 4y4v:A (2.04) BS01 DAL ? GO:0008360 ... O25255 26306031 MOAD: Kd=224uM
    PDBbind: -logKd/Ki=3.65, Kd=224uM
    73 4y4v:A (2.04) BS02 DAL ? GO:0008360 ... O25255 26306031 MOAD: Kd=224uM
    PDBbind: -logKd/Ki=3.65, Kd=224uM
    74 4y4v:B (2.04) BS01 DAL ? GO:0008360 ... O25255 26306031 MOAD: Kd=224uM
    75 5c1p:D (2.4) BS02 DAL 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    76 5c1p:D (2.4) BS03 DAL 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    77 5nri:A (1.5) BS02 DAL 6.3.2.4 GO:0003824 ... A3NZL3 31260169
    78 5nri:A (1.5) BS03 DAL 6.3.2.4 GO:0003824 ... A3NZL3 31260169
    79 5zhw:A (2.18) BS02 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    80 5zhw:A (2.18) BS03 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    81 5zhw:B (2.18) BS02 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    82 5zhw:B (2.18) BS03 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    83 6a6a:A (2.26) BS01 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    84 6a6a:B (2.26) BS01 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    85 6csf:M (3.3) BS02 DAL ? GO:0003333 ... Q6LX42 30659158 PDBbind: -logKd/Ki=5.44, Kd=3.6uM
    86 6g7n:A (1.1) BS01 DAL ? GO:0006826 ... Q10Z45 30217820
    87 6g7n:B (1.1) BS01 DAL ? GO:0006826 ... Q10Z45 30217820
    88 6ll9:B (2.7) BS01 DAL 6.3.2.4 GO:0003824 ... A0KKW8 32609505
    89 6u1d:A (1.9) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    90 6u1d:A (1.9) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    91 6u1d:B (1.9) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    92 6u1d:B (1.9) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    93 6u1e:A (2.1) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    94 6u1e:A (2.1) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    95 6u1e:B (2.1) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    96 6u1e:B (2.1) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    97 6u1f:A (2.3) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    98 6u1f:A (2.3) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    99 6u1f:B (2.3) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    100 6u1f:B (2.3) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    101 6u1g:A (2.4) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    102 6u1g:A (2.4) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    103 6u1g:B (2.4) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    104 6u1g:B (2.4) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    105 6u1j:A (2.2) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    106 6u1j:A (2.2) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    107 6u1j:C (2.2) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    108 6u1j:C (2.2) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    109 6u1k:A (1.67) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    110 6u1k:A (1.67) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    111 6u1k:B (1.67) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    112 6u1k:B (1.67) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    113 6u1k:C (1.67) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    114 6u1k:C (1.67) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    115 6u1k:D (1.67) BS01 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    116 6u1k:D (1.67) BS02 DAL 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    117 6u83:A (2.3566) BS01 DAL ? GO:0016020 ... Q5NH85 N/A
    118 7r27:A (2.01) BS01 DAL N/A GO:0005524 ... N/A 35907949
    119 7r27:B (2.01) BS01 DAL N/A GO:0005524 ... N/A 35907949
    120 7rjj:A (1.88) BS01 DAL ? N/A A0A422WJQ0 36695589
    121 7rjj:B (1.88) BS01 DAL ? N/A A0A422WJQ0 36695589
    122 7uo3:A (1.8) BS02 DAL ? N/A H9L4J5 36183829
    123 7uo3:A (1.8) BS03 DAL ? N/A H9L4J5 36183829
    124 8evw:A (1.22) BS02 DAL 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    125 8evw:A (1.22) BS03 DAL 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    126 8evw:B (1.22) BS02 DAL 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    127 8evw:B (1.22) BS03 DAL 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    128 8evy:A (2.35) BS01 DAL 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    129 8evy:A (2.35) BS02 DAL 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    130 8evy:B (2.35) BS01 DAL 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    131 8evy:B (2.35) BS02 DAL 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    132 8evy:C (2.35) BS01 DAL 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    133 8evy:C (2.35) BS02 DAL 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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