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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tx0:A (2.01) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    2 6tx0:A (2.01) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    3 6tx0:B (2.01) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    4 6tx0:B (2.01) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    5 6txa:A (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    6 6txa:A (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    7 6txa:B (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    8 6txa:B (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    9 6txa:C (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    10 6txa:C (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    11 6txa:D (2.853) BS03 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    12 6txa:D (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    13 6txa:E (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    14 6txa:E (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    15 6txa:F (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    16 6txa:F (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    17 6txa:G (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    18 6txa:G (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    19 6txa:H (2.853) BS02 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    20 6txa:H (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    21 6txa:I (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    22 6txa:I (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    23 6txa:J (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    24 6txa:J (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    25 6txa:K (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    26 6txa:K (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    27 6txa:L (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    28 6txa:L (2.853) BS08 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    29 6txa:M (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    30 6txa:M (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    31 6txa:N (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    32 6txa:N (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    33 6txa:O (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    34 6txa:O (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    35 6txa:P (2.853) BS02 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    36 6txa:P (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    37 6txf:A (2.25) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    38 6txf:A (2.25) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    39 6txf:B (2.25) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    40 6txf:B (2.25) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    41 6yom:A (3.25) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    42 6yom:A (3.25) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    43 6yom:B (3.25) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    44 6yom:B (3.25) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    45 7em2:A (2.6) BS02 CZF 2.7.1.149 GO:0005515 ... P78356 35504278
    46 7em5:A (2.8) BS02 CZF 2.7.1.149 GO:0005515 ... P78356 35504278
    47 7em7:A (3.45) BS02 CZF 2.7.1.149 GO:0005515 ... P78356 35504278
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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