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BioLiP
Download all results in tab-seperated text for 251 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lbc:A (1.8) BS03 CYZ ? GO:0015276 ... P19491 12015593 BindingDB: EC50=7600nM
    2 1lbc:A (1.8) BS04 CYZ ? GO:0015276 ... P19491 12015593 BindingDB: EC50=7600nM
    3 1lbc:B (1.8) BS04 CYZ ? GO:0015276 ... P19491 12015593 BindingDB: EC50=7600nM
    4 1lbc:C (1.8) BS01 CYZ ? GO:0015276 ... P19491 12015593 BindingDB: EC50=7600nM
    5 1lbc:C (1.8) BS03 CYZ ? GO:0015276 ... P19491 12015593 BindingDB: EC50=7600nM
    6 3h6t:A (2.25) BS02 CYZ ? GO:0015276 ... P19491 19591837 BindingDB: EC50=7600nM
    7 3h6t:A (2.25) BS04 CYZ ? GO:0015276 ... P19491 19591837 BindingDB: EC50=7600nM
    8 3h6t:B (2.25) BS02 CYZ ? GO:0015276 ... P19491 19591837 BindingDB: EC50=7600nM
    9 3h6t:C (2.25) BS01 CYZ ? GO:0015276 ... P19491 19591837 BindingDB: EC50=7600nM
    10 3h6t:C (2.25) BS03 CYZ ? GO:0015276 ... P19491 19591837 BindingDB: EC50=7600nM
    11 3tkd:A (1.45) BS02 CYZ ? GO:0015276 ... P19491 21895609 BindingDB: EC50=7600nM
    12 3tkd:A (1.45) BS03 CYZ ? GO:0015276 ... P19491 21895609 BindingDB: EC50=7600nM
    13 3tkd:B (1.45) BS01 CYZ ? GO:0015276 ... P19491 21895609 BindingDB: EC50=7600nM
    14 3tkd:B (1.45) BS03 CYZ ? GO:0015276 ... P19491 21895609 BindingDB: EC50=7600nM
    15 5weo:A (4.2) BS02 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    16 5weo:A (4.2) BS03 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    17 5weo:B (4.2) BS02 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    18 5weo:B (4.2) BS03 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    19 5weo:C (4.2) BS01 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    20 5weo:C (4.2) BS03 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    21 5weo:D (4.2) BS01 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    22 5weo:D (4.2) BS03 CYZ ? GO:0000149 ... O88602
    P19491
    28737760
    23 6dlz:A (3.9) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    24 6dlz:A (3.9) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    25 6dlz:B (3.9) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    26 6dlz:B (3.9) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    27 6dlz:C (3.9) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    28 6dlz:C (3.9) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    29 6dlz:D (3.9) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    30 6dlz:D (3.9) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    31 6dm0:A (4.4) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    32 6dm0:B (4.4) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    33 6dm0:B (4.4) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    34 6dm0:C (4.4) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    35 6dm0:C (4.4) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    36 6dm0:D (4.4) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    37 6dm0:D (4.4) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    38 6dm1:A (4.2) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    39 6dm1:A (4.2) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    40 6dm1:B (4.2) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    41 6dm1:B (4.2) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    42 6dm1:C (4.2) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    43 6dm1:C (4.2) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    44 6dm1:D (4.2) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    45 6dm1:D (4.2) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    46 6o9g:A (4.8) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    47 6o9g:B (4.8) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    48 6o9g:B (4.8) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    49 6o9g:C (4.8) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    50 6o9g:D (4.8) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    51 6o9g:D (4.8) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    52 7ocf:A (3.6) BS01 CYZ ? GO:0001540 ... P19490 34079129
    53 7ocf:B (3.6) BS01 CYZ ? GO:0005216 ... P19491 34079129 BindingDB: EC50=7600nM
    54 7ocf:C (3.6) BS01 CYZ ? GO:0001540 ... P19490 34079129
    55 7ocf:D (3.6) BS01 CYZ ? GO:0005216 ... P19491 34079129 BindingDB: EC50=7600nM
    56 7qhb:A (3.5) BS02 CYZ ? GO:0001540 ... P19490 35136046
    57 7qhb:B (3.5) BS01 CYZ ? GO:0005216 ... P19491 35136046
    58 7qhb:B (3.5) BS03 CYZ ? GO:0005216 ... P19491 35136046
    59 7qhb:C (3.5) BS03 CYZ ? GO:0001540 ... P19490 35136046
    60 7qhb:D (3.5) BS01 CYZ ? GO:0005216 ... P19491 35136046
    61 7qhb:D (3.5) BS03 CYZ ? GO:0005216 ... P19491 35136046
    62 7tnj:A (4.02) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    63 7tnj:B (4.02) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    64 7tnj:C (4.02) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    65 7tnj:D (4.02) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    66 7tnk:A (4.5) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    67 7tnk:B (4.5) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    68 7tnk:B (4.5) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    69 7tnk:C (4.5) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    70 7tnk:C (4.5) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    71 7tnk:D (4.5) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    72 7tnk:D (4.5) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    73 7tnl:A (3.59) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    74 7tnl:A (3.59) BS03 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    75 7tnl:B (3.59) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    76 7tnl:B (3.59) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    77 7tnl:C (3.59) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    78 7tnl:C (3.59) BS03 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    79 7tnl:D (3.59) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    80 7tnl:D (3.59) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    81 7tnm:A (4.74) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    82 7tnm:A (4.74) BS03 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    83 7tnm:B (4.74) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    84 7tnm:B (4.74) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    85 7tnm:C (4.74) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    86 7tnm:D (4.74) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    87 7tnm:D (4.74) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    88 7tnn:A (3.91) BS02 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    89 7tnn:A (3.91) BS03 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    90 7tnn:B (3.91) BS02 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    91 7tnn:B (3.91) BS03 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    92 7tnn:C (3.91) BS01 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    93 7tnn:D (3.91) BS01 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    94 7tnn:D (3.91) BS02 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    95 7tno:A (4.02) BS02 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    96 7tno:A (4.02) BS03 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    97 7tno:B (4.02) BS02 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    98 7tno:C (4.02) BS01 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    99 7tno:C (4.02) BS03 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    100 7tno:D (4.02) BS01 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    101 7tno:D (4.02) BS02 CYZ ? GO:0000149 ... P19491
    Q71RJ2
    35444281
    102 7tnp:A (3.96) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    103 7tnp:A (3.96) BS03 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    104 7tnp:B (3.96) BS02 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    105 7tnp:B (3.96) BS03 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    106 7tnp:C (3.96) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    107 7tnp:C (3.96) BS03 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    108 7tnp:D (3.96) BS01 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    109 7tnp:D (3.96) BS03 CYZ ? GO:0000149 ... P19491
    Q8VHX0
    35444281
    110 8ayo:A (3.3) BS02 CYZ ? GO:0001540 ... P19490 36966141
    111 8ayo:B (3.3) BS02 CYZ ? GO:0005216 ... P19491 36966141
    112 8ayo:C (3.3) BS02 CYZ ? GO:0001540 ... P19490 36966141
    113 8ayo:D (3.3) BS02 CYZ ? GO:0005216 ... P19491 36966141
    114 8c1p:A (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    115 8c1p:B (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    116 8c1p:C (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    117 8c1p:C (2.9) BS02 CYZ ? GO:0001540 ... P19490 37704721
    118 8c1p:D (2.9) BS01 CYZ ? GO:0001540 ... P19490 37704721
    119 8fpc:A (2.78) BS02 CYZ ? GO:0005216 ... P19491 38409505
    120 8fpc:A (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    121 8fpc:B (2.78) BS02 CYZ ? GO:0005216 ... P19491 38409505
    122 8fpc:B (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    123 8fpc:C (2.78) BS01 CYZ ? GO:0005216 ... P19491 38409505
    124 8fpc:C (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    125 8fpc:D (2.78) BS01 CYZ ? GO:0005216 ... P19491 38409505
    126 8fpc:D (2.78) BS03 CYZ ? GO:0005216 ... P19491 38409505
    127 8fph:A (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    128 8fph:A (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    129 8fph:B (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    130 8fph:B (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    131 8fph:C (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    132 8fph:C (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    133 8fph:D (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    134 8fph:D (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    135 8fpk:A (2.76) BS02 CYZ ? GO:0005216 ... P19491 38409505
    136 8fpk:A (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    137 8fpk:B (2.76) BS02 CYZ ? GO:0005216 ... P19491 38409505
    138 8fpk:B (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    139 8fpk:C (2.76) BS01 CYZ ? GO:0005216 ... P19491 38409505
    140 8fpk:C (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    141 8fpk:D (2.76) BS01 CYZ ? GO:0005216 ... P19491 38409505
    142 8fpk:D (2.76) BS03 CYZ ? GO:0005216 ... P19491 38409505
    143 8fpl:A (2.81) BS02 CYZ ? GO:0005216 ... P19491 38409505
    144 8fpl:A (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    145 8fpl:B (2.81) BS02 CYZ ? GO:0005216 ... P19491 38409505
    146 8fpl:B (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    147 8fpl:C (2.81) BS01 CYZ ? GO:0005216 ... P19491 38409505
    148 8fpl:C (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    149 8fpl:D (2.81) BS01 CYZ ? GO:0005216 ... P19491 38409505
    150 8fpl:D (2.81) BS03 CYZ ? GO:0005216 ... P19491 38409505
    151 8fpv:A (3.08) BS02 CYZ ? GO:0005216 ... P19491 38409505
    152 8fpv:A (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    153 8fpv:B (3.08) BS02 CYZ ? GO:0005216 ... P19491 38409505
    154 8fpv:B (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    155 8fpv:C (3.08) BS01 CYZ ? GO:0005216 ... P19491 38409505
    156 8fpv:C (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    157 8fpv:D (3.08) BS01 CYZ ? GO:0005216 ... P19491 38409505
    158 8fpv:D (3.08) BS03 CYZ ? GO:0005216 ... P19491 38409505
    159 8fpy:A (2.98) BS02 CYZ ? GO:0005216 ... P19491 38409505
    160 8fpy:A (2.98) BS03 CYZ ? GO:0005216 ... P19491 38409505
    161 8fpy:B (2.98) BS02 CYZ ? GO:0005216 ... P19491 38409505
    162 8fpy:B (2.98) BS03 CYZ ? GO:0005216 ... P19491 38409505
    163 8fpy:C (2.98) BS01 CYZ ? GO:0005216 ... P19491 38409505
    164 8fpy:C (2.98) BS03 CYZ ? GO:0005216 ... P19491 38409505
    165 8fpy:D (2.98) BS01 CYZ ? GO:0005216 ... P19491 38409505
    166 8fpy:D (2.98) BS03 CYZ ? GO:0005216 ... P19491 38409505
    167 8fpz:A (3.01) BS02 CYZ ? GO:0005216 ... P19491 38409505
    168 8fpz:A (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    169 8fpz:B (3.01) BS02 CYZ ? GO:0005216 ... P19491 38409505
    170 8fpz:B (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    171 8fpz:C (3.01) BS01 CYZ ? GO:0005216 ... P19491 38409505
    172 8fpz:C (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    173 8fpz:D (3.01) BS01 CYZ ? GO:0005216 ... P19491 38409505
    174 8fpz:D (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    175 8fq2:A (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    176 8fq2:A (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    177 8fq2:B (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    178 8fq2:B (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    179 8fq2:C (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    180 8fq2:C (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    181 8fq2:D (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    182 8fq2:D (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    183 8fq3:A (3.17) BS01 CYZ ? GO:0005216 ... P19491 38409505
    184 8fq3:A (3.17) BS03 CYZ ? GO:0005216 ... P19491 38409505
    185 8fq3:B (3.17) BS02 CYZ ? GO:0005216 ... P19491 38409505
    186 8fq3:B (3.17) BS03 CYZ ? GO:0005216 ... P19491 38409505
    187 8fq3:C (3.17) BS01 CYZ ? GO:0005216 ... P19491 38409505
    188 8fq3:C (3.17) BS03 CYZ ? GO:0005216 ... P19491 38409505
    189 8fq3:D (3.17) BS02 CYZ ? GO:0005216 ... P19491 38409505
    190 8fq3:D (3.17) BS03 CYZ ? GO:0005216 ... P19491 38409505
    191 8fq6:A (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    192 8fq6:A (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    193 8fq6:B (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    194 8fq6:B (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    195 8fq6:C (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    196 8fq6:C (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    197 8fq6:D (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    198 8fq6:D (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    199 8fq8:A (3.11) BS02 CYZ ? GO:0005216 ... P19491 38409505
    200 8fq8:A (3.11) BS03 CYZ ? GO:0005216 ... P19491 38409505

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218