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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ike:A (2.3) BS02 CYT 4.6.1.12 GO:0008299 ... Q63T71 21359640
    2 3ike:B (2.3) BS01 CYT 4.6.1.12 GO:0008299 ... Q63T71 21359640
    3 3ike:C (2.3) BS01 CYT 4.6.1.12 GO:0008299 ... Q63T71 21359640
    4 3mbm:A (1.8) BS02 CYT 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    5 3mbm:B (1.8) BS03 CYT 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    6 3mbm:C (1.8) BS04 CYT 4.6.1.12 GO:0008299 ... Q3JRA0 21359640
    7 3oah:A (3.0) BS01 CYT ? GO:0005198 ... O56137 20861247
    8 3slb:A (2.0) BS02 CYT 2.3.1.81 GO:0008080 ... A0A3P1UCA6 N/A
    9 3slb:B (2.0) BS02 CYT 2.3.1.81 GO:0008080 ... A0A3P1UCA6 N/A
    10 3slb:C (2.0) BS02 CYT 2.3.1.81 GO:0008080 ... A0A3P1UCA6 N/A
    11 3slb:D (2.0) BS02 CYT 2.3.1.81 GO:0008080 ... A0A3P1UCA6 N/A
    12 4iqi:A (1.5) BS01 CYT 1.7.1.13 GO:0003674 ... Q9KTK0 N/A
    13 4iqi:B (1.5) BS01 CYT 1.7.1.13 GO:0003674 ... Q9KTK0 N/A
    14 4ld4:B (3.0) BS02 CYT 3.5.-.- GO:0003824 ... Q82Y41 24083949
    15 4zt8:A (1.98) BS01 CYT 3.2.2.22 GO:0000166 ... D9J2T9 29124196 PDBbind: -logKd/Ki=4.39, Kd=41uM
    16 5buv:A (1.75) BS01 CYT 5.1.3.13 GO:0005829 ... A1JNA0 26174084
    17 5buv:B (1.75) BS01 CYT 5.1.3.13 GO:0005829 ... A1JNA0 26174084
    18 5efo:A (1.63) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    19 5efo:B (1.63) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    20 5efo:C (1.63) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    21 5efo:C (1.63) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    22 5efo:D (1.63) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    23 5efo:D (1.63) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    24 5epu:A (1.06) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    25 5epu:B (1.06) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    26 5epu:C (1.06) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    27 5epu:D (1.06) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    28 5epu:E (1.06) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    29 5epu:F (1.06) BS01 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    30 5ere:A (2.0) BS02 CYT ? GO:0046872 ... C8WZ86 N/A
    31 5ko5:A (1.36) BS01 CYT 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840 PDBbind: -logKd/Ki=4.57, Kd=27uM
    32 5ko6:A (1.42) BS01 CYT 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    33 5lok:A (1.109) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    34 5lok:B (1.109) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    35 5lok:C (1.109) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    36 5lok:D (1.109) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    37 5lok:E (1.109) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    38 5lok:F (1.109) BS02 CYT 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    39 7qoa:A (2.4) BS01 CYT N/A GO:0015209 ... N/A 35775318
    40 7qoa:B (2.4) BS01 CYT N/A GO:0015209 ... N/A 35775318
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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