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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 2n0m:A (-1.00) BS01 CU1 ? GO:0005507 ... Q5F809 26589091
    202 2pp7:A (1.65) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    203 2pp7:B (1.65) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    204 2pp7:C (1.65) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    205 2pp8:A (1.5) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    206 2pp8:B (1.5) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    207 2pp8:C (1.5) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    208 2pp9:A (1.8) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    209 2pp9:B (1.8) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    210 2pp9:C (1.8) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    211 2ppa:A (1.69) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    212 2ppa:B (1.69) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    213 2ppa:C (1.69) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    214 2ppc:A (1.58) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    215 2ppc:B (1.58) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    216 2ppc:C (1.58) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    217 2ppd:A (1.8) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    218 2ppd:B (1.8) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    219 2ppd:C (1.8) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    220 2ppe:A (1.75) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    221 2ppe:B (1.75) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    222 2ppe:C (1.75) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    223 2ppf:A (1.65) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    224 2ppf:B (1.65) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    225 2ppf:B (1.65) BS03 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    226 2ppf:C (1.65) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    227 2ppf:C (1.65) BS03 CU1 1.7.2.1 GO:0005507 ... P38501 17924665
    228 2qdw:A (0.92) BS01 CU1 ? GO:0005507 ... P22364 17824674
    229 2qif:A (1.5) BS01 CU1 ? GO:0005507 ... O32221 19746989
    230 2qif:A (1.5) BS02 CU1 ? GO:0005507 ... O32221 19746989
    231 2qif:B (1.5) BS01 CU1 ? GO:0005507 ... O32221 19746989
    232 2qif:B (1.5) BS02 CU1 ? GO:0005507 ... O32221 19746989
    233 2qpd:A (3.25) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 18084085
    234 2qpe:A (2.9) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 18084085
    235 2rac:A (1.3) BS01 CU1 ? GO:0005507 ... P22364 9860825
    236 2rli:A (-1.00) BS01 CU1 ? N/A O43819 17850752
    237 2rnb:A (-1.00) BS01 CU1 ? GO:0005507 ... Q14061 18093982
    238 2rsq:A (-1.00) BS01 CU1 ? GO:0005507 ... O14618 N/A
    239 2xmt:A (1.5) BS01 CU1 ? GO:0005507 ... P73213 20726513
    240 2xmt:B (1.5) BS01 CU1 ? GO:0005507 ... P73213 20726513
    241 2xmu:A (1.75) BS01 CU1 ? GO:0005507 ... P73213 20726513
    242 2xmu:A (1.75) BS02 CU1 ? GO:0005507 ... P73213 20726513
    243 2xmu:B (1.75) BS01 CU1 ? GO:0005507 ... P73213 20726513
    244 2xmu:B (1.75) BS02 CU1 ? GO:0005507 ... P73213 20726513
    245 2xmv:A (1.8) BS01 CU1 ? GO:0005507 ... P73213 20726513
    246 2xmv:B (1.8) BS01 CU1 ? GO:0005507 ... P73213 20726513
    247 2xmv:C (1.8) BS01 CU1 ? GO:0005507 ... P73213 20726513
    248 2xmv:D (1.8) BS01 CU1 ? GO:0005507 ... P73213 20726513
    249 2xmv:E (1.8) BS01 CU1 ? GO:0005507 ... P73213 20726513
    250 2xmv:F (1.8) BS01 CU1 ? GO:0005507 ... P73213 20726513
    251 2xmw:A (1.8) BS01 CU1 7.2.2.8 GO:0046872 ... P73241 20726513
    252 2xv0:A (1.6) BS01 CU1 ? GO:0005507 ... P00282 21141901
    253 2xv2:A (1.6) BS01 CU1 ? GO:0005507 ... P00282 21141901
    254 2xv3:A (2.3) BS01 CU1 ? GO:0005507 ... P00282 21141901
    255 2xv3:B (2.3) BS01 CU1 ? GO:0005507 ... P00282 21141901
    256 2yox:A (1.9) BS01 CU1 N/A N/A N/A 23540833
    257 2yox:B (1.9) BS01 CU1 N/A N/A N/A 23540833
    258 2yoy:A (1.7) BS01 CU1 N/A N/A N/A 23540833
    259 2yoy:B (1.7) BS01 CU1 N/A N/A N/A 23540833
    260 2z8y:M (2.51) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 18293927
    261 2z8y:N (2.51) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 18293927
    262 2z8y:O (2.51) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 18293927
    263 2z8y:P (2.51) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 18293927
    264 2zkw:A (1.9) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 N/A
    265 2zkw:B (1.9) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 N/A
    266 2zkx:A (2.72) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 N/A
    267 2zkx:B (2.72) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 N/A
    268 2zkx:C (2.72) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 N/A
    269 2zkx:D (2.72) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 N/A
    270 2zmz:A (1.37) BS01 CU1 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    271 2zmz:A (1.37) BS02 CU1 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    272 2zmz:B (1.37) BS01 CU1 ? GO:0005507 ... Q83WS1 N/A
    273 2zow:A (1.45) BS02 CU1 1.15.1.1 GO:0000209 ... P00442 N/A
    274 2zow:B (1.45) BS02 CU1 1.15.1.1 GO:0000209 ... P00442 N/A
    275 2zwd:A (1.35) BS01 CU1 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    276 2zwd:A (1.35) BS02 CU1 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    277 3cvb:A (1.4) BS01 CU1 ? GO:0005507 ... Q51883 18479147
    278 3cvb:B (1.4) BS01 CU1 ? GO:0005507 ... Q51883 18479147
    279 3cvd:A (1.5) BS01 CU1 ? GO:0005507 ... Q51883 18479147
    280 3cvd:B (1.5) BS01 CU1 ? GO:0005507 ... Q51883 18479147
    281 3cvd:C (1.5) BS02 CU1 ? GO:0005507 ... Q51883 18479147
    282 3dso:A (1.55) BS01 CU1 ? GO:0042597 ... Q58AD3 19236095
    283 3eh3:A (3.1) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 19140675
    284 3eh4:A (2.9) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 19140675
    285 3eh5:A (2.8) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 19140675
    286 3eim:A (1.88) BS01 CU1 3.4.24.27 GO:0004222 ... P00800 N/A
    287 3f7k:A (1.35) BS01 CU1 1.15.1.1 GO:0004784 ... B6CHW7 19063897
    288 3f7l:A (0.99) BS01 CU1 1.15.1.1 GO:0004784 ... B6CHW7 19063897
    289 3fsa:A (0.98) BS01 CU1 ? GO:0005507 ... P00282 19299503
    290 3ft0:A (1.8) BS01 CU1 ? GO:0005507 ... P00282 19299503
    291 3ft0:B (1.8) BS01 CU1 ? GO:0005507 ... P00282 19299503
    292 3fye:A (2.15) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 19397279
    293 3fye:B (2.15) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    294 3fye:B (2.15) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    295 3fye:C (2.15) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 19397279
    296 3fye:D (2.15) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    297 3fye:D (2.15) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    298 3fyi:A (2.2) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 19397279
    299 3fyi:B (2.2) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    300 3fyi:B (2.2) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    301 3fyi:C (2.2) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 19397279
    302 3fyi:D (2.2) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    303 3fyi:D (2.2) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 19397279
    304 3hb3:A (2.25) BS03 CU1 7.1.1.9 GO:0004129 ... P98002 19374884
    305 3hb3:B (2.25) BS02 CU1 7.1.1.9 GO:0004129 ... P08306 19374884
    306 3hb3:B (2.25) BS03 CU1 7.1.1.9 GO:0004129 ... P08306 19374884
    307 3hw7:A (2.0) BS01 CU1 1.15.1.1 GO:0000209 ... P00442 20516618
    308 3hw7:B (2.0) BS01 CU1 1.15.1.1 GO:0000209 ... P00442 20516618
    309 3i01:M (2.15) BS02 CU1 2.3.1.169 GO:0003824 ... P27988 19583207
    310 3i01:N (2.15) BS02 CU1 2.3.1.169 GO:0003824 ... P27988 19583207
    311 3i01:P (2.15) BS02 CU1 2.3.1.169 GO:0003824 ... P27988 19583207
    312 3i04:N (2.15) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 19583207
    313 3i04:P (2.15) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 19583207
    314 3i9z:A (1.9) BS01 CU1 ? GO:0005507 ... O32221 19751213
    315 3k0i:A (4.116) BS01 CU1 ? GO:0005375 ... P38054 N/A
    316 3n7d:A (2.149) BS02 CU1 ? GO:0042597 ... Q58AD3 N/A
    317 3nt0:A (1.8) BS01 CU1 1.16.3.4 GO:0004322 ... P36649 21903583
    318 3nt0:A (1.8) BS02 CU1 1.16.3.4 GO:0004322 ... P36649 21903583
    319 3nt0:A (1.8) BS03 CU1 1.16.3.4 GO:0004322 ... P36649 21903583
    320 3nt0:A (1.8) BS04 CU1 1.16.3.4 GO:0004322 ... P36649 21903583
    321 3nt0:A (1.8) BS05 CU1 1.16.3.4 GO:0004322 ... P36649 21903583
    322 3nt0:A (1.8) BS06 CU1 1.16.3.4 GO:0004322 ... P36649 21903583
    323 3nt0:A (1.8) BS07 CU1 1.16.3.4 GO:0004322 ... P36649 21903583
    324 3om3:A (2.6) BS05 CU1 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    325 3om3:B (2.6) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    326 3om3:B (2.6) BS05 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    327 3om3:C (2.6) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    328 3om3:D (2.6) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    329 3om3:D (2.6) BS05 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    330 3oma:B (2.3) BS05 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    331 3oma:D (2.3) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    332 3omi:B (2.15) BS05 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    333 3omi:D (2.15) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    334 3omn:A (2.15) BS05 CU1 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    335 3omn:B (2.15) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    336 3omn:B (2.15) BS05 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    337 3omn:C (2.15) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    338 3omn:D (2.15) BS03 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    339 3omn:D (2.15) BS04 CU1 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    340 3ow7:A (3.78) BS01 CU1 ? GO:0016020 ... P77239 19695261
    341 3ow7:B (3.78) BS01 CU1 ? GO:0016020 ... P77239 19695261
    342 3qjq:A (2.9) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 22226917
    343 3qjr:A (3.2) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 22226917
    344 3qjs:A (2.8) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 22226917
    345 3qjt:A (2.95) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 22226917
    346 3qju:A (2.9) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 22226917
    347 3qjv:A (2.8) BS01 CU1 7.1.1.9 GO:0004129 ... Q5SJ79 22226917
    348 3qqx:A (1.5) BS03 CU1 1.16.3.4 GO:0004322 ... P36649 N/A
    349 3qqx:A (1.5) BS04 CU1 1.16.3.4 GO:0004322 ... P36649 N/A
    350 3qqx:A (1.5) BS05 CU1 1.16.3.4 GO:0004322 ... P36649 N/A
    351 3qqx:A (1.5) BS06 CU1 1.16.3.4 GO:0004322 ... P36649 N/A
    352 3qqx:A (1.5) BS07 CU1 1.16.3.4 GO:0004322 ... P36649 N/A
    353 3t0u:A (1.9) BS01 CU1 1.4.3.21 GO:0005507 ... P12807 22691777
    354 3t0u:B (1.9) BS01 CU1 1.4.3.21 GO:0005507 ... P12807 22691777
    355 3t0u:C (1.9) BS01 CU1 1.4.3.21 GO:0005507 ... P12807 22691777
    356 3t5w:A (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    357 3t5w:B (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    358 3t5w:D (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    359 3t5w:E (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    360 3t5w:F (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    361 3t5w:G (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    362 3t5w:H (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    363 3t5w:I (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    364 3t5w:J (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    365 3t5w:K (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    366 3t5w:L (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    367 3t5w:M (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 22804629
    368 3zdw:A (2.4) BS01 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 14764581
    369 3zdw:A (2.4) BS02 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 14764581
    370 3zdw:A (2.4) BS03 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 14764581
    371 3zdw:A (2.4) BS04 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 14764581
    372 4bdv:B (3.98) BS01 CU1 ? GO:0005507 ... P00451 23435097
    373 4bz4:A (1.6) BS01 CU1 ? N/A H8GPE3 24498370
    374 4bz4:B (1.6) BS01 CU1 ? N/A H8GPE3 24498370
    375 4bz4:C (1.6) BS01 CU1 ? N/A H8GPE3 24498370
    376 4bz4:D (1.6) BS01 CU1 ? N/A H8GPE3 24498370
    377 4bz4:E (1.6) BS01 CU1 ? N/A H8GPE3 24498370
    378 4bz4:F (1.6) BS01 CU1 ? N/A H8GPE3 24498370
    379 4dp1:X (1.35) BS01 CU1 ? GO:0005507 ... P11970 22883960
    380 4dp4:X (1.54) BS01 CU1 ? GO:0005507 ... P11970 22883960
    381 4dp6:X (1.67) BS01 CU1 ? GO:0005507 ... P11970 22883960
    382 4dp8:X (1.07) BS01 CU1 ? GO:0005507 ... P00299 22883960
    383 4dpa:X (1.05) BS01 CU1 ? GO:0005507 ... P00299 22883960
    384 4dpc:X (1.06) BS01 CU1 ? GO:0005507 ... P00299 22883960
    385 4f2e:A (1.449) BS01 CU1 ? N/A A0A0H2ZPL4 23354287
    386 4f2e:A (1.449) BS02 CU1 ? N/A A0A0H2ZPL4 23354287
    387 4f2f:A (1.5) BS01 CU1 7.2.2.8 N/A A0A0H2ZQ91 23354287
    388 4f2f:A (1.5) BS02 CU1 7.2.2.8 N/A A0A0H2ZQ91 23354287
    389 4l05:A (1.098) BS01 CU1 1.15.1.1 GO:0004784 ... P15453 26459556
    390 4m1p:A (2.564) BS01 CU1 ? GO:0003677 ... A4INJ9 24831014
    391 4mai:A (1.4) BS01 CU1 3.2.1.14 N/A Q2UA85 24362702
    392 4n3t:A (1.4) BS01 CU1 1.15.1.1 GO:0005507 ... Q5AD07 24711423
    393 4oua:A (2.763) BS01 CU1 N/A GO:0016491 ... N/A 25195745
    394 4oua:A (2.763) BS02 CU1 N/A GO:0016491 ... N/A 25195745
    395 4oua:B (2.763) BS01 CU1 N/A GO:0004503 ... N/A 25195745
    396 4oua:B (2.763) BS02 CU1 N/A GO:0004503 ... N/A 25195745
    397 4p5s:A (1.02) BS01 CU1 ? GO:0005507 ... P22364 24704124
    398 4rkm:A (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    399 4rkm:B (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    400 4rkm:C (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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