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BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 2idf:B (2.25) BS01 CU ? GO:0005507 ... P00282 N/A
    1202 2idq:A (0.9) BS01 CU ? GO:0005507 ... P22364 17295442
    1203 2idt:A (1.0) BS01 CU ? GO:0005507 ... P22364 17295442
    1204 2ih8:A (2.0) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1205 2ih8:A (2.0) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1206 2ih8:A (2.0) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1207 2ih8:A (2.0) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1208 2ih8:B (2.0) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1209 2ih8:B (2.0) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1210 2ih8:B (2.0) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1211 2ih8:B (2.0) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1212 2ih9:A (2.0) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1213 2ih9:A (2.0) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1214 2ih9:A (2.0) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1215 2ih9:A (2.0) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1216 2ih9:B (2.0) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1217 2ih9:B (2.0) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1218 2ih9:B (2.0) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1219 2ih9:B (2.0) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    1220 2iwf:A (1.86) BS01 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1221 2iwf:A (1.86) BS02 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1222 2iwf:B (1.86) BS02 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1223 2iwf:B (1.86) BS03 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1224 2iwk:A (1.7) BS01 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1225 2iwk:A (1.7) BS02 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1226 2iwk:B (1.7) BS01 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1227 2iwk:B (1.7) BS02 CU 1.7.2.4 GO:0004129 ... P94127 16904686
    1228 2j55:A (2.15) BS01 CU ? GO:0005507 ... P22364 17211075
    1229 2j55:B (2.15) BS01 CU ? GO:0005507 ... P22364 17211075
    1230 2j56:A (2.1) BS01 CU ? GO:0005507 ... P22364 17211075
    1231 2j56:B (2.1) BS01 CU ? GO:0005507 ... P22364 17211075
    1232 2j56:M (2.1) BS01 CU 1.4.9.1 GO:0009308 ... P22619 17211075
    1233 2j57:A (2.25) BS01 CU ? GO:0005507 ... P22364 17211075
    1234 2j57:B (2.25) BS01 CU ? GO:0005507 ... P22364 17211075
    1235 2j57:C (2.25) BS01 CU ? GO:0005507 ... P22364 17211075
    1236 2j57:D (2.25) BS01 CU ? GO:0005507 ... P22364 17211075
    1237 2j5w:A (2.8) BS02 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    1238 2j5w:A (2.8) BS03 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    1239 2j5w:A (2.8) BS04 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    1240 2j5w:A (2.8) BS05 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    1241 2j5w:A (2.8) BS07 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    1242 2j5w:A (2.8) BS08 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    1243 2j5w:A (2.8) BS09 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    1244 2jfc:A (2.4) BS01 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1245 2jfc:A (2.4) BS02 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1246 2jfc:B (2.4) BS01 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1247 2jfc:B (2.4) BS02 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1248 2jfc:C (2.4) BS01 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1249 2jfc:C (2.4) BS02 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1250 2jfc:D (2.4) BS01 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1251 2jfc:D (2.4) BS02 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1252 2jfc:E (2.4) BS01 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1253 2jfc:E (2.4) BS02 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1254 2jfc:F (2.4) BS01 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1255 2jfc:F (2.4) BS02 CU 1.7.2.1 GO:0005507 ... O68601 17503096
    1256 2jkw:A (1.6) BS01 CU ? GO:0005507 ... P19567 18939838
    1257 2jkw:B (1.6) BS01 CU ? GO:0005507 ... P19567 18939838
    1258 2jlp:A (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    1259 2jlp:B (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    1260 2jlp:C (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    1261 2jlp:D (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    1262 2jxm:A (-1.00) BS01 CU ? GO:0005507 ... P50057 18201089
    1263 2k1r:A (-1.00) BS01 CU 7.2.2.8 GO:0005507 ... Q04656 N/A
    1264 2lel:A (-1.00) BS02 CU ? GO:0042597 ... Q58AD3 21936507
    1265 2lu5:A (-1.00) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22723345
    1266 2mta:A (2.4) BS01 CU ? GO:0005507 ... P22364 8140419
    1267 2nrd:A (2.1) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    1268 2nrd:A (2.1) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    1269 2occ:A (2.3) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    1270 2occ:B (2.3) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    1271 2occ:B (2.3) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    1272 2occ:N (2.3) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    1273 2occ:O (2.3) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    1274 2occ:O (2.3) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    1275 2oj1:A (2.3) BS01 CU ? GO:0005507 ... P00282 N/A
    1276 2oj1:B (2.3) BS01 CU ? GO:0005507 ... P00282 N/A
    1277 2oov:A (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1278 2oov:B (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1279 2oov:C (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1280 2oov:D (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1281 2oov:E (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1282 2oov:F (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1283 2oqe:A (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1284 2oqe:B (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1285 2oqe:C (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1286 2oqe:D (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1287 2oqe:E (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1288 2oqe:F (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    1289 2ov0:A (0.75) BS01 CU ? GO:0005507 ... P22364 N/A
    1290 2oxi:A (2.1) BS01 CU 1.1.1.1 GO:0004022 ... P00327 15299812
    1291 2oxi:B (2.1) BS01 CU 1.1.1.1 GO:0004022 ... P00327 15299812
    1292 2p80:A (-1.00) BS01 CU 1.7.2.1 GO:0005507 ... P38501 N/A
    1293 2p80:A (-1.00) BS02 CU 1.7.2.1 GO:0005507 ... P38501 N/A
    1294 2p80:B (-1.00) BS01 CU 1.7.2.1 GO:0005507 ... P38501 N/A
    1295 2p80:B (-1.00) BS02 CU 1.7.2.1 GO:0005507 ... P38501 N/A
    1296 2p80:C (-1.00) BS01 CU 1.7.2.1 GO:0005507 ... P38501 N/A
    1297 2p80:C (-1.00) BS02 CU 1.7.2.1 GO:0005507 ... P38501 N/A
    1298 2p80:D (-1.00) BS01 CU ? GO:0005507 ... P04377 N/A
    1299 2pcf:A (-1.00) BS01 CU ? GO:0005507 ... P00289 9551554
    1300 2plt:A (1.5) BS01 CU ? GO:0005507 ... P18068 8399201
    1301 2pnc:A (2.4) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 17989349
    1302 2pnc:B (2.4) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 17989349
    1303 2pp7:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1304 2pp7:B (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1305 2pp7:C (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1306 2pp8:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1307 2pp8:B (1.5) BS02 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1308 2pp8:C (1.5) BS02 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1309 2pp9:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1310 2pp9:B (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1311 2pp9:C (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1312 2ppa:A (1.69) BS02 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1313 2ppa:B (1.69) BS03 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1314 2ppa:C (1.69) BS03 CU 1.7.2.1 GO:0005507 ... P38501 18358002
    1315 2ppc:A (1.58) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1316 2ppc:B (1.58) BS03 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1317 2ppc:C (1.58) BS03 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1318 2ppd:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1319 2ppd:B (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1320 2ppd:C (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1321 2ppe:A (1.75) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1322 2ppe:B (1.75) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1323 2ppe:C (1.75) BS03 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1324 2ppf:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1325 2ppf:B (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1326 2ppf:C (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 17924665
    1327 2q5b:A (1.45) BS01 CU ? GO:0005507 ... Q51883 N/A
    1328 2q5b:B (1.45) BS01 CU ? GO:0005507 ... Q51883 N/A
    1329 2q5b:C (1.45) BS01 CU ? GO:0005507 ... Q51883 N/A
    1330 2q9o:A (1.3) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1331 2q9o:A (1.3) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1332 2q9o:A (1.3) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1333 2q9o:A (1.3) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1334 2q9o:B (1.3) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1335 2q9o:B (1.3) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1336 2q9o:B (1.3) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1337 2q9o:B (1.3) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    1338 2qdv:A (0.89) BS01 CU ? GO:0005507 ... P22364 17824674
    1339 2qt6:A (1.5) BS01 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1340 2qt6:A (1.5) BS02 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1341 2qt6:A (1.5) BS03 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1342 2qt6:A (1.5) BS04 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1343 2qt6:B (1.5) BS01 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1344 2qt6:B (1.5) BS02 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1345 2qt6:B (1.5) BS03 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1346 2qt6:B (1.5) BS04 CU 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    1347 2r27:A (2.0) BS01 CU 1.15.1.1 GO:0000302 ... P00441 17888947
    1348 2r27:B (2.0) BS01 CU 1.15.1.1 GO:0000302 ... P00441 17888947
    1349 2r7e:A (3.7) BS04 CU ? GO:0005507 ... P00451 17965321
    1350 2r7e:B (3.7) BS01 CU ? GO:0005507 ... P00451 17965321
    1351 2sod:B (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    1352 2sod:G (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    1353 2sod:O (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    1354 2sod:Y (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 7175933
    1355 2trx:A (1.68) BS01 CU ? GO:0005515 ... P0AA25 2181145
    1356 2trx:B (1.68) BS01 CU ? GO:0005515 ... P0AA25 2181145
    1357 2tsa:A (2.2) BS01 CU ? GO:0005507 ... P00282 15299604
    1358 2tsa:B (2.2) BS01 CU ? GO:0005507 ... P00282 15299604
    1359 2tsa:C (2.2) BS01 CU ? GO:0005507 ... P00282 15299604
    1360 2tsa:D (2.2) BS01 CU ? GO:0005507 ... P00282 15299604
    1361 2tsb:A (2.3) BS02 CU ? GO:0005507 ... P00282 15299604
    1362 2tsb:B (2.3) BS02 CU ? GO:0005507 ... P00282 15299604
    1363 2tsb:C (2.3) BS02 CU ? GO:0005507 ... P00282 15299604
    1364 2tsb:D (2.3) BS02 CU ? GO:0005507 ... P00282 15299604
    1365 2uwf:A (2.1) BS01 CU 3.2.1.8 GO:0004553 ... P07528 19567261
    1366 2ux6:A (1.3) BS01 CU ? GO:0005507 ... P19567 17685636
    1367 2ux7:A (1.3) BS01 CU ? GO:0005507 ... P19567 17685636
    1368 2uxf:A (2.0) BS01 CU ? GO:0005507 ... P19567 17685636
    1369 2uxg:A (1.99) BS01 CU ? GO:0005507 ... P19567 17685636
    1370 2v0a:A (1.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 17548825
    1371 2v0a:F (1.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 17548825
    1372 2vb2:X (1.7) BS01 CU ? GO:0005507 ... P77214 18157124
    1373 2vm3:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18353369
    1374 2vm3:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18353369
    1375 2vm4:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18353369
    1376 2vm4:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18353369
    1377 2vn3:A (2.35) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18491346
    1378 2vn3:A (2.35) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18491346
    1379 2vov:A (1.35) BS02 CU ? N/A G1UBC6 18348978
    1380 2vox:A (1.9) BS02 CU ? N/A G1UBC6 18348978
    1381 2vr6:A (1.3) BS01 CU 1.15.1.1 GO:0000302 ... P00441 18378676
    1382 2vr6:F (1.3) BS02 CU 1.15.1.1 GO:0000302 ... P00441 18378676
    1383 2vr7:A (1.58) BS01 CU 1.15.1.1 GO:0000302 ... P00441 18378676
    1384 2vr7:F (1.58) BS01 CU 1.15.1.1 GO:0000302 ... P00441 18378676
    1385 2vr8:A (1.36) BS01 CU 1.15.1.1 GO:0000302 ... P00441 18378676
    1386 2vr8:F (1.36) BS01 CU 1.15.1.1 GO:0000302 ... P00441 18378676
    1387 2vw4:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1388 2vw4:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1389 2vw4:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1390 2vw4:B (1.9) BS03 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1391 2vw6:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1392 2vw6:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1393 2vw6:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1394 2vw6:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1395 2vw7:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1396 2vw7:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1397 2vw7:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1398 2vw7:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 18728313
    1399 2vz3:A (1.9) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    1400 2vz3:A (1.9) BS02 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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