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BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 5xti:x (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P00396 28844695
    4002 5xti:y (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    4003 5xti:y (17.4) BS02 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    4004 5y23:A (1.4) BS01 CU ? GO:0005507 ... P19567 N/A
    4005 5y23:B (1.4) BS01 CU ? GO:0005507 ... P19567 N/A
    4006 5y4c:A (2.701) BS01 CU ? N/A Q25C86 28919419
    4007 5yfd:A (1.76) BS01 CU 3.4.14.4 GO:0004177 ... B0S4Q0 29050944
    4008 5yfd:B (1.76) BS01 CU 3.4.14.4 GO:0004177 ... B0S4Q0 29050944
    4009 5ys1:A (1.49) BS01 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4010 5ys1:A (1.49) BS02 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4011 5ys1:A (1.49) BS03 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4012 5ys5:A (2.2) BS01 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4013 5ys5:A (2.2) BS02 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4014 5ys5:A (2.2) BS03 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4015 5ys5:A (2.2) BS04 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4016 5ys5:A (2.2) BS05 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4017 5ys5:A (2.2) BS06 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    4018 5ysg:A (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    4019 5ysg:B (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    4020 5ysg:C (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    4021 5ysg:D (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    4022 5yt7:A (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    4023 5yt7:B (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    4024 5yt7:C (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    4025 5yt7:D (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    4026 5ytl:A (1.401) BS01 CU N/A GO:0005507 ... N/A 30082512
    4027 5ytl:A (1.401) BS02 CU N/A GO:0005507 ... N/A 30082512
    4028 5ytl:A (1.401) BS03 CU N/A GO:0005507 ... N/A 30082512
    4029 5ytm:A (1.5) BS01 CU N/A GO:0005507 ... N/A 30082512
    4030 5ytm:A (1.5) BS02 CU N/A GO:0005507 ... N/A 30082512
    4031 5ytm:A (1.5) BS03 CU N/A GO:0005507 ... N/A 30082512
    4032 5ytn:A (1.75) BS01 CU N/A GO:0005507 ... N/A 30082512
    4033 5ytn:A (1.75) BS02 CU N/A GO:0005507 ... N/A 30082512
    4034 5ytn:A (1.75) BS03 CU N/A GO:0005507 ... N/A 30082512
    4035 5yw3:A (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    4036 5yw3:B (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    4037 5yw3:C (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    4038 5yw3:D (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    4039 5z0d:A (1.16) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4040 5z0d:A (1.16) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4041 5z0d:B (1.16) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4042 5z0e:A (1.16) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4043 5z0e:A (1.16) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4044 5z0e:B (1.16) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4045 5z0f:A (1.16) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4046 5z0f:A (1.16) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4047 5z0f:A (1.16) BS03 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4048 5z0f:B (1.16) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4049 5z0g:A (1.32) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4050 5z0g:A (1.32) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4051 5z0h:A (1.18) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4052 5z0h:A (1.18) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4053 5z0h:B (1.18) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4054 5z0i:A (1.32) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4055 5z0i:A (1.32) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4056 5z0i:B (1.32) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4057 5z0j:A (1.35) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4058 5z0j:A (1.35) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4059 5z0j:B (1.35) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4060 5z0k:A (1.28) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4061 5z0k:A (1.28) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4062 5z0k:B (1.28) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4063 5z0l:A (1.17) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4064 5z0l:A (1.17) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4065 5z0l:B (1.17) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    4066 5z0m:A (1.7) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4067 5z0m:A (1.7) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    4068 5z0x:A (1.46) BS01 CU ? GO:0005507 ... P19567 N/A
    4069 5z0x:B (1.46) BS01 CU ? GO:0005507 ... P19567 N/A
    4070 5z1x:A (1.38) BS01 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4071 5z1x:A (1.38) BS02 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4072 5z1x:A (1.38) BS03 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4073 5z1x:A (1.38) BS04 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4074 5z1x:B (1.38) BS01 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4075 5z1x:B (1.38) BS02 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4076 5z1x:B (1.38) BS03 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4077 5z1x:B (1.38) BS04 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    4078 5z22:A (1.5) BS01 CU N/A GO:0005507 ... N/A 31278318
    4079 5z22:A (1.5) BS02 CU N/A GO:0005507 ... N/A 31278318
    4080 5z22:A (1.5) BS03 CU N/A GO:0005507 ... N/A 31278318
    4081 5z22:A (1.5) BS04 CU N/A GO:0005507 ... N/A 31278318
    4082 5z62:A (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00395 30030519
    4083 5z62:B (3.6) BS02 CU 7.1.1.9 GO:0001666 ... P00403 30030519
    4084 5z62:B (3.6) BS03 CU 7.1.1.9 GO:0001666 ... P00403 30030519
    4085 5z84:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4086 5z84:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4087 5z85:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4088 5z85:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4089 5z86:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4090 5z86:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4091 5zco:A (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4092 5zco:N (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4093 5zcp:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4094 5zcp:N (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4095 5zcq:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4096 5zcq:N (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4097 5zhw:A (2.18) BS01 CU 3.4.17.- GO:0006508 ... Q47746 30016658
    4098 5zhw:B (2.18) BS01 CU 3.4.17.- GO:0006508 ... Q47746 30016658
    4099 5zl1:A (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4100 5zl1:A (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4101 5zl1:B (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4102 5zl1:B (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4103 5zl1:C (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4104 5zl1:C (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4105 5zl1:D (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4106 5zl1:D (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    4107 5zlj:A (1.96) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4108 5zlj:A (1.96) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4109 5zlj:A (1.96) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4110 5zlj:A (1.96) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4111 5zlk:A (2.6) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4112 5zlk:A (2.6) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4113 5zlk:A (2.6) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4114 5zlk:A (2.6) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4115 5zll:A (2.6) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4116 5zll:A (2.6) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4117 5zll:A (2.6) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4118 5zlm:A (1.7) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4119 5zlm:A (1.7) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4120 5zlm:A (1.7) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    4121 5zou:A (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4122 5zou:B (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4123 5zow:A (1.778) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4124 5zow:B (1.778) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4125 5zox:A (1.691) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4126 5zox:B (1.691) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4127 5zoy:A (1.695) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4128 5zoy:B (1.695) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4129 5zoz:A (1.702) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4130 5zoz:B (1.702) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4131 5zp0:A (1.738) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4132 5zp0:B (1.738) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4133 5zp1:A (1.669) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4134 5zp1:B (1.669) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4135 5zp2:A (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4136 5zp2:B (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4137 5zp3:A (1.782) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4138 5zp3:B (1.782) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4139 5zp4:A (1.799) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4140 5zp4:B (1.799) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4141 5zp5:A (1.767) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4142 5zp5:B (1.767) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4143 5zp6:A (1.688) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4144 5zp6:B (1.688) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4145 5zp7:A (1.631) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4146 5zp7:B (1.631) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4147 5zp8:A (1.66) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4148 5zp8:B (1.66) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4149 5zp9:A (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4150 5zp9:B (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4151 5zpa:A (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4152 5zpa:B (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4153 5zpb:A (1.793) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4154 5zpb:B (1.793) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4155 5zpc:A (1.741) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4156 5zpc:B (1.741) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4157 5zpd:A (1.665) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4158 5zpd:B (1.665) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4159 5zpe:A (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4160 5zpe:B (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4161 5zpf:A (1.759) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4162 5zpf:B (1.759) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4163 5zpg:A (1.649) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4164 5zpg:B (1.649) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4165 5zph:A (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4166 5zph:B (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4167 5zpi:A (1.747) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4168 5zpi:B (1.747) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4169 5zpj:A (1.647) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4170 5zpj:B (1.647) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4171 5zpk:A (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4172 5zpk:B (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4173 5zpl:A (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4174 5zpl:B (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4175 5zpm:A (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4176 5zpm:B (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4177 5zpn:A (1.6) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4178 5zpn:B (1.6) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4179 5zpo:A (1.73) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4180 5zpo:B (1.73) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4181 5zpp:A (1.81) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4182 5zpp:B (1.81) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4183 5zpq:A (1.849) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4184 5zpq:B (1.849) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4185 5zpr:A (1.922) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4186 5zpr:B (1.922) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4187 5zps:A (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4188 5zps:B (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4189 5zpt:A (1.902) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4190 5zpt:B (1.902) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    4191 5zrd:A (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4192 5zrd:A (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4193 5zrd:B (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4194 5zrd:B (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4195 5zrd:C (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4196 5zrd:C (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4197 5zrd:D (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4198 5zrd:D (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4199 5zre:A (2.5) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    4200 5zre:A (2.5) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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