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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 4oy7:C (1.5) BS01 CU ? N/A Q9RJY2 24912171
    3002 4oy7:D (1.5) BS01 CU ? N/A Q9RJY2 24912171
    3003 4oy7:E (1.5) BS01 CU ? N/A Q9RJY2 24912171
    3004 4oy7:F (1.5) BS01 CU ? N/A Q9RJY2 24912171
    3005 4oy7:G (1.5) BS01 CU ? N/A Q9RJY2 24912171
    3006 4oy7:H (1.5) BS01 CU ? N/A Q9RJY2 24912171
    3007 4p5r:A (1.09) BS01 CU ? GO:0005507 ... P22364 24704124
    3008 4p6t:A (2.5) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 25074014
    3009 4p6t:A (2.5) BS03 CU 1.14.18.1 GO:0016491 ... B2ZB02 25074014
    3010 4p6t:B (2.5) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 25074014
    3011 4p6t:B (2.5) BS03 CU 1.14.18.1 GO:0016491 ... B2ZB02 25074014
    3012 4paz:A (1.76) BS01 CU ? GO:0005507 ... P04377 9341204
    3013 4pcy:A (2.15) BS01 CU ? GO:0005507 ... P00299 3560221
    3014 4phz:A (2.59) BS01 CU N/A N/A N/A 24942740
    3015 4phz:C (2.59) BS02 CU N/A N/A N/A 24942740
    3016 4phz:E (2.59) BS01 CU N/A N/A N/A 24942740
    3017 4phz:G (2.59) BS02 CU N/A N/A N/A 24942740
    3018 4phz:I (2.59) BS01 CU N/A N/A N/A 24942740
    3019 4phz:K (2.59) BS02 CU N/A N/A N/A 24942740
    3020 4pi0:A (3.15) BS01 CU N/A N/A N/A 24942740
    3021 4pi0:C (3.15) BS02 CU N/A N/A N/A 24942740
    3022 4pi0:E (3.15) BS01 CU N/A N/A N/A 24942740
    3023 4pi0:G (3.15) BS02 CU N/A N/A N/A 24942740
    3024 4pi0:I (3.15) BS01 CU N/A N/A N/A 24942740
    3025 4pi0:K (3.15) BS02 CU N/A N/A N/A 24942740
    3026 4pi2:A (3.33) BS01 CU N/A N/A N/A 24942740
    3027 4pi2:E (3.33) BS01 CU N/A N/A N/A 24942740
    3028 4pi2:I (3.33) BS01 CU N/A N/A N/A 24942740
    3029 4q89:A (2.31) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3030 4q89:A (2.31) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3031 4q89:A (2.31) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3032 4q89:A (2.31) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3033 4q89:B (2.31) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3034 4q89:B (2.31) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3035 4q89:B (2.31) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3036 4q89:B (2.31) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3037 4q8b:A (1.91) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3038 4q8b:A (1.91) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3039 4q8b:A (1.91) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3040 4q8b:A (1.91) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3041 4q8b:B (1.91) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3042 4q8b:B (1.91) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3043 4q8b:B (1.91) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3044 4q8b:B (1.91) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    3045 4qi8:A (1.1) BS01 CU 3.2.1.4 GO:0004497 ... Q1K4Q1 26151670
    3046 4qi8:B (1.1) BS01 CU 3.2.1.4 GO:0004497 ... Q1K4Q1 26151670
    3047 4qkt:A (1.641) BS01 CU ? GO:0005507 ... P00282 25082811
    3048 4qkt:B (1.641) BS01 CU ? GO:0005507 ... P00282 25082811
    3049 4r0o:A (4.2) BS01 CU ? GO:0005507 ... Q51883 26391082
    3050 4r0o:B (4.2) BS01 CU ? GO:0005507 ... Q51883 26391082
    3051 4r0o:C (4.2) BS01 CU ? GO:0005507 ... Q51883 26391082
    3052 4r0o:D (4.2) BS01 CU ? GO:0005507 ... Q51883 26391082
    3053 4r6d:A (1.55) BS01 CU ? GO:0006091 ... Q9U6Y3 N/A
    3054 4r6d:A (1.55) BS02 CU ? GO:0006091 ... Q9U6Y3 N/A
    3055 4rkn:A (2.1) BS10 CU 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    3056 4rkn:B (2.1) BS10 CU 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    3057 4rkn:C (2.1) BS11 CU 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    3058 4rkn:D (2.1) BS10 CU 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    3059 4uah:A (1.73) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3060 4uah:A (1.73) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3061 4uah:A (1.73) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3062 4uah:B (1.73) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3063 4uah:B (1.73) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3064 4uah:B (1.73) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3065 4uah:C (1.73) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3066 4uah:C (1.73) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3067 4uah:C (1.73) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3068 4uan:A (1.8) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3069 4uan:A (1.8) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3070 4uan:A (1.8) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3071 4uan:B (1.8) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3072 4uan:B (1.8) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3073 4uan:B (1.8) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3074 4uan:C (1.8) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3075 4uan:C (1.8) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3076 4uan:C (1.8) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3077 4unm:A (1.77) BS01 CU ? GO:0005975 ... D6EWM0 26205496
    3078 4unm:B (1.77) BS01 CU ? GO:0005975 ... D6EWM0 26205496
    3079 4w1t:A (1.55) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3080 4w1t:A (1.55) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3081 4w1t:A (1.55) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3082 4w1t:B (1.55) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3083 4w1t:B (1.55) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3084 4w1t:B (1.55) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3085 4w1t:C (1.55) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    3086 4w1t:C (1.55) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    3087 4w1t:C (1.55) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    3088 4w75:B (3.473) BS01 CU N/A GO:0006091 ... N/A 26278175
    3089 4w76:A (2.35) BS01 CU N/A GO:0006091 ... N/A 26278175
    3090 4w76:B (2.35) BS01 CU N/A GO:0006091 ... N/A 26278175
    3091 4w77:A (3.1) BS01 CU N/A GO:0006091 ... N/A 26278175
    3092 4w77:B (3.1) BS01 CU N/A GO:0006091 ... N/A 26278175
    3093 4w7a:A (3.603) BS01 CU N/A GO:0006091 ... N/A 26278175
    3094 4w7a:B (3.603) BS01 CU N/A GO:0006091 ... N/A 26278175
    3095 4w7c:B (2.5) BS01 CU N/A GO:0006091 ... N/A 26278175
    3096 4w7c:D (2.5) BS01 CU N/A GO:0006091 ... N/A 26278175
    3097 4w7d:A (1.8) BS01 CU N/A GO:0006091 ... N/A 26278175
    3098 4w7e:A (2.592) BS01 CU N/A GO:0006091 ... N/A 26278175
    3099 4w7f:A (2.9) BS01 CU N/A GO:0006091 ... N/A 26278175
    3100 4w7r:A (1.8) BS01 CU N/A GO:0006091 ... N/A 26278175
    3101 4w7r:B (1.8) BS01 CU N/A GO:0006091 ... N/A 26278175
    3102 4w7r:C (1.8) BS01 CU N/A GO:0006091 ... N/A 26278175
    3103 4w7r:D (1.8) BS01 CU N/A GO:0006091 ... N/A 26278175
    3104 4w9z:A (1.3) BS01 CU 7.1.1.9 GO:0004129 ... H7C6E5 N/A
    3105 4w9z:A (1.3) BS02 CU 7.1.1.9 GO:0004129 ... H7C6E5 N/A
    3106 4wbr:D (1.4) BS01 CU ? N/A Q89VB6 N/A
    3107 4wf5:B (1.45) BS02 CU 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635
    3108 4wkx:A (1.94) BS01 CU ? GO:0005507 ... P00282 N/A
    3109 4wkx:B (1.94) BS01 CU ? GO:0005507 ... P00282 N/A
    3110 4wtq:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3111 4wtq:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3112 4wtq:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3113 4wtq:B (1.8) BS01 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3114 4wtq:B (1.8) BS02 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3115 4wtq:B (1.8) BS03 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3116 4wtq:C (1.8) BS01 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3117 4wtq:C (1.8) BS02 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3118 4wtq:C (1.8) BS03 CU 1.10.3.2 GO:0005507 ... B5HSR1 N/A
    3119 4x27:A (2.4) BS01 CU ? GO:0046872 ... Q83389 25787255
    3120 4x4k:A (2.3) BS03 CU ? GO:0005507 ... H8ZRU2 26625287
    3121 4x4k:A (2.3) BS04 CU ? GO:0005507 ... H8ZRU2 26625287
    3122 4x4k:A (2.3) BS05 CU ? GO:0005507 ... H8ZRU2 26625287
    3123 4x4k:A (2.3) BS06 CU ? GO:0005507 ... H8ZRU2 26625287
    3124 4xyd:B (2.85) BS04 CU 1.7.2.5 GO:0009055 ... Q16A03 27185533
    3125 4yl4:A (1.1) BS01 CU ? GO:0005507 ... P19567 N/A
    3126 4ysa:A (1.43) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3127 4ysa:A (1.43) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3128 4ysa:A (1.43) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3129 4ysc:A (2.03) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3130 4ysc:A (2.03) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3131 4ysc:B (2.03) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3132 4ysc:B (2.03) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3133 4ysc:C (2.03) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3134 4ysc:C (2.03) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3135 4ysd:A (1.35) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3136 4ysd:A (1.35) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3137 4ysd:A (1.35) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3138 4ysd:A (1.35) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3139 4ysd:A (1.35) BS05 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3140 4yse:A (1.2) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3141 4yse:A (1.2) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3142 4yse:B (1.2) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3143 4yse:B (1.2) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3144 4yse:C (1.2) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3145 4yse:C (1.2) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    3146 4yso:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3147 4yso:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3148 4yso:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3149 4yso:A (1.5) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3150 4ysp:A (1.34) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3151 4ysp:A (1.34) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3152 4ysp:A (1.34) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3153 4ysp:A (1.34) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3154 4ysq:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3155 4ysq:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3156 4ysq:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3157 4ysq:A (1.5) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3158 4ysr:A (1.34) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3159 4ysr:A (1.34) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3160 4ysr:A (1.34) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3161 4ysr:A (1.34) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3162 4yss:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3163 4yss:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3164 4yss:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3165 4yss:A (1.5) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3166 4yst:A (1.34) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3167 4yst:A (1.34) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3168 4yst:A (1.34) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3169 4ysu:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3170 4ysu:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3171 4ysu:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    3172 4yvn:A (2.3) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 27050268
    3173 4yvn:A (2.3) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 27050268
    3174 4yvn:A (2.3) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 27050268
    3175 4yvu:A (2.3) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 27050268
    3176 4yvu:A (2.3) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 27050268
    3177 4yvu:A (2.3) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 27050268
    3178 4yzw:A (2.6) BS01 CU 1.10.3.-
    1.14.18.-    		 GO:0004097 ... Q8MZM3 26732497
    3179 4yzw:A (2.6) BS02 CU 1.10.3.-
    1.14.18.-    		 GO:0004097 ... Q8MZM3 26732497
    3180 4yzw:B (2.6) BS01 CU 1.10.3.-
    1.14.18.-    		 GO:0004097 ... Q8MZM3 26732497
    3181 4yzw:B (2.6) BS02 CU 1.10.3.-
    1.14.18.-    		 GO:0004097 ... Q8MZM3 26732497
    3182 4z0y:A (1.6) BS02 CU ? GO:0004097 ... A0A075DN54 26976571
    3183 4z0y:A (1.6) BS03 CU ? GO:0004097 ... A0A075DN54 26976571
    3184 4z0y:B (1.6) BS03 CU ? GO:0004097 ... A0A075DN54 26976571
    3185 4z0y:B (1.6) BS04 CU ? GO:0004097 ... A0A075DN54 26976571
    3186 4z0y:C (1.6) BS02 CU ? GO:0004097 ... A0A075DN54 26976571
    3187 4z0y:C (1.6) BS03 CU ? GO:0004097 ... A0A075DN54 26976571
    3188 4z0y:D (1.6) BS03 CU ? GO:0004097 ... A0A075DN54 26976571
    3189 4z0y:D (1.6) BS04 CU ? GO:0004097 ... A0A075DN54 26976571
    3190 4z0z:A (1.6) BS02 CU ? GO:0004097 ... A0A075DN54 26976571
    3191 4z0z:B (1.6) BS03 CU ? GO:0004097 ... A0A075DN54 26976571
    3192 4z0z:C (1.6) BS03 CU ? GO:0004097 ... A0A075DN54 26976571
    3193 4z0z:D (1.6) BS02 CU ? GO:0004097 ... A0A075DN54 26976571
    3194 4z10:A (1.93) BS02 CU ? GO:0004097 ... A0A075DN54 N/A
    3195 4z10:B (1.93) BS02 CU ? GO:0004097 ... A0A075DN54 N/A
    3196 4z10:C (1.93) BS04 CU ? GO:0004097 ... A0A075DN54 N/A
    3197 4z10:D (1.93) BS03 CU ? GO:0004097 ... A0A075DN54 N/A
    3198 4z10:E (1.93) BS02 CU ? GO:0004097 ... A0A075DN54 N/A
    3199 4z10:F (1.93) BS04 CU ? GO:0004097 ... A0A075DN54 N/A
    3200 4z11:A (2.5) BS01 CU ? GO:0004097 ... A0A075DN54 26976571
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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