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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ro7:A (1.8) BS01 CSF 2.4.99.- N/A Q9LAK3 14730352 PDBbind: -logKd/Ki=3.18, Ki=657uM
    2 1ro7:B (1.8) BS01 CSF 2.4.99.- N/A Q9LAK3 14730352
    3 1ro7:C (1.8) BS01 CSF 2.4.99.- N/A Q9LAK3 14730352 MOAD: Ki=657uM
    4 1ro7:D (1.8) BS01 CSF 2.4.99.- N/A Q9LAK3 14730352
    5 2drj:A (2.25) BS01 CSF 2.4.99.- N/A Q9LAK3 16862130
    6 2ihj:A (2.0) BS01 CSF 2.4.99.4 GO:0016757 ... Q15KI8 17487984 MOAD: Ki=25.7uM
    PDBbind: -logKd/Ki=4.59, Ki=25.7uM
    7 2ihk:A (1.9) BS01 CSF 2.4.99.4 GO:0016757 ... Q15KI8 17487984 MOAD: Ki=10.2uM
    8 2ihz:A (2.0) BS03 CSF 2.4.99.4 GO:0016757 ... Q15KI8 17487984 MOAD: Ki=27.5uM
    9 2iy7:A (1.85) BS01 CSF ? GO:0016757 ... Q15KI8 18304450
    10 2iy8:A (2.5) BS03 CSF ? N/A Q9CP67 18304450
    11 2p2v:A (1.85) BS01 CSF 2.4.99.- N/A Q9RGF1 17518445
    12 2wqq:A (2.25) BS01 CSF 2.4.99.- GO:0016757 ... Q9LAK3 19824695
    13 2yk7:A (2.18) BS01 CSF 2.4.3.6 N/A P72097 21880735
    14 4r84:A (1.7) BS01 CSF 2.4.99.1 N/A O66375 25451227
    15 4r84:B (1.7) BS01 CSF 2.4.99.1 N/A O66375 25451227
    16 4r84:C (1.7) BS01 CSF 2.4.99.1 N/A O66375 25451227
    17 4r84:D (1.7) BS01 CSF 2.4.99.1 N/A O66375 25451227
    18 5bo9:A (2.3) BS04 CSF 2.4.3.-
    2.4.3.8    		 GO:0006486 ... O43173 26192331
    19 5bo9:B (2.3) BS03 CSF 2.4.3.-
    2.4.3.8    		 GO:0006486 ... O43173 26192331
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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